CircRNA Information

General Information
circRNA Basic Information
CircID chr2:218403089|218403303
Strand +
CircType exon
Host Gene ENSG00000144579.6;
Algorism CIRI2;
Sequence GCAGGACTCTCGAAACAGCCGGGCCCGGAAGGCCCCCCATTTGTCCAGCAGGTCAGCTACTGGGTCTGCGTACTGGGAGCAGGAGGTGGGTCATCCTGGGGCCCGCAGGTTCATTGGGCTGCATGCGGGAGGTAGGTAGGAGGGCAGGGTTGCCCCGGGACCCCTGTGGGGCTCACCTTGGCGAGGCTAGCAGTGAACAGCACACATTCAAAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:218403089|218403303 hsa-miR-370-5p 0 0 1
chr2:218403089|218403303 hsa-miR-370-3p 0 0 1
chr2:218403089|218403303 hsa-miR-621 0 0 1
chr2:218403089|218403303 hsa-miR-631 0 0 1
chr2:218403089|218403303 hsa-miR-1287-5p 0 0 1
chr2:218403089|218403303 hsa-miR-1287-3p 0 0 1
chr2:218403089|218403303 hsa-miR-1225-3p 0 0 1
chr2:218403089|218403303 hsa-miR-296-5p 0 0 1
chr2:218403089|218403303 hsa-miR-770-5p 0 0 1
chr2:218403089|218403303 hsa-miR-615-5p 0 1 1
chr2:218403089|218403303 hsa-miR-1224-3p 0 1 1
chr2:218403089|218403303 hsa-miR-1233 0 0 1
chr2:218403089|218403303 hsa-miR-220c 0 0 1
chr2:218403089|218403303 hsa-miR-346 1 0 0
chr2:218403089|218403303 hsa-miR-492 0 1 0
chr2:218403089|218403303 hsa-miR-637 0 1 0
chr2:218403089|218403303 hsa-miR-1470 1 0 0
chr2:218403089|218403303 hsa-miR-1471 1 0 0
chr2:218403089|218403303 hsa-miR-1538 1 1 0
chr2:218403089|218403303 hsa-miR-1913 1 0 0
chr2:218403089|218403303 hsa-miR-1976 1 1 0
chr2:218403089|218403303 hsa-miR-2861 1 0 0
chr2:218403089|218403303 hsa-miR-4297 0 1 0
chr2:218403089|218403303 hsa-miR-4323 0 1 0
chr2:218403089|218403303 hsa-miR-4281 0 1 0
chr2:218403089|218403303 hsa-miR-4290 1 1 0
chr2:218403089|218403303 hsa-miR-1268b 1 0 0
chr2:218403089|218403303 hsa-miR-4449 1 1 0
chr2:218403089|218403303 hsa-miR-4505 1 0 0
chr2:218403089|218403303 hsa-miR-4734 0 1 0
chr2:218403089|218403303 hsa-miR-5193 1 0 0
chr2:218403089|218403303 hsa-miR-18a-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3194-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6747-3p 1 1 0
chr2:218403089|218403303 hsa-miR-6836-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4687-3p 0 1 0
chr2:218403089|218403303 hsa-miR-1233-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3692-5p 0 1 0
chr2:218403089|218403303 hsa-miR-874-5p 0 1 0
chr2:218403089|218403303 hsa-miR-512-3p 1 0 0
chr2:218403089|218403303 hsa-miR-874-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3189-5p 0 1 0
chr2:218403089|218403303 hsa-miR-1915-5p 1 0 0
chr2:218403089|218403303 hsa-miR-6845-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4655-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6882-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4713-5p 0 1 0
chr2:218403089|218403303 hsa-miR-532-3p 1 0 0
chr2:218403089|218403303 hsa-miR-1343-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4763-5p 1 0 0
chr2:218403089|218403303 hsa-miR-6894-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6749-5p 1 1 0
chr2:218403089|218403303 hsa-miR-4667-3p 1 1 0
chr2:218403089|218403303 hsa-miR-1304-3p 0 1 0
chr2:218403089|218403303 hsa-miR-339-5p 1 0 0
chr2:218403089|218403303 hsa-miR-6889-3p 1 0 0
chr2:218403089|218403303 hsa-miR-660-3p 0 1 0
chr2:218403089|218403303 hsa-miR-4687-5p 1 0 0
chr2:218403089|218403303 hsa-miR-6813-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6887-3p 0 1 0
chr2:218403089|218403303 hsa-miR-6752-3p 1 1 0
chr2:218403089|218403303 hsa-miR-6886-3p 1 1 0
chr2:218403089|218403303 hsa-miR-5088-3p 1 0 0
chr2:218403089|218403303 hsa-miR-328-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4746-5p 0 1 0
chr2:218403089|218403303 hsa-miR-3184-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3620-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4750-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6779-3p 1 0 0
chr2:218403089|218403303 hsa-miR-1249-3p 1 0 0
chr2:218403089|218403303 hsa-miR-1244 0 1 0
chr2:218403089|218403303 hsa-miR-6732-3p 1 1 0
chr2:218403089|218403303 hsa-miR-6750-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3127-3p 1 0 0
chr2:218403089|218403303 hsa-miR-328-5p 0 1 0
chr2:218403089|218403303 hsa-miR-4745-3p 1 0 0
chr2:218403089|218403303 hsa-miR-4722-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6727-3p 1 0 0
chr2:218403089|218403303 hsa-miR-10401-3p 1 0 0
chr2:218403089|218403303 hsa-miR-6805-3p 1 0 0
chr2:218403089|218403303 hsa-miR-3130-5p 1 0 0
chr2:218403089|218403303 hsa-miR-7114-3p 0 1 0
chr2:218403089|218403303 hsa-miR-4690-3p 0 1 0
chr2:218403089|218403303 hsa-miR-4769-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:218403089|218403303
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MSSRSATGSAYWEQEVGHPGARRFIGLHAGGR
Nucleotide Sequence TTGTCCAGCAGGTCAGCTACTGGGTCTGCGTACTGGGAGCAGGAGGTGGGTCATCCTGGGGCCCGCAGGTTCATTGGGCTGCATGCGGGAGGTAGGTAG
CircID chr2:218403089|218403303
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MGLRTGSRRWVILGPAGSLGCMREVGRRAGLPRDPCGAHLGEASSEQHTFKE
Nucleotide Sequence CTGGGTCTGCGTACTGGGAGCAGGAGGTGGGTCATCCTGGGGCCCGCAGGTTCATTGGGCTGCATGCGGGAGGTAGGTAGGAGGGCAGGGTTGCCCCGGGACCCCTGTGGGGCTCACCTTGGCGAGGCTAGCAGTGAACAGCACACATTCAAAGAG
CircID chr2:218403089|218403303
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MFTASLAKVSPTGVPGQPCPPTYLPHAAQ
Nucleotide Sequence CTGTTCACTGCTAGCCTCGCCAAGGTGAGCCCCACAGGGGTCCCGGGGCAACCCTGCCCTCCTACCTACCTCCCGCATGCAGCCCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab