CircRNA Information

General Information
circRNA Basic Information
CircID chr2:218405332|218405544
Strand -
CircType exon
Host Gene ENSG00000144579.6;
Algorism CIRI2;
Sequence AAGCTGGGCCAAGGGGCCCAGGCCCTGTCCTCTGTCCCTCACACCCCTTTGCTCCGTTCATTCATTCAAAAAAACATTTCTTGAGCACCTTCTGTGCCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGTGGGGGGTCTCTACGCCAGCTCATCAGTGCCTCCTTGCCCATCCTTCACCGGTGCCTTTGGGGGATCTGTAGGAGGTGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:218405332|218405544 hsa-miR-18a-5p 0 0 1
chr2:218405332|218405544 hsa-miR-18a-3p 0 0 1
chr2:218405332|218405544 hsa-miR-328-5p 0 0 1
chr2:218405332|218405544 hsa-miR-328-3p 0 0 1
chr2:218405332|218405544 hsa-miR-18b-5p 0 0 1
chr2:218405332|218405544 hsa-miR-18b-3p 0 0 1
chr2:218405332|218405544 hsa-miR-506-5p 0 0 1
chr2:218405332|218405544 hsa-miR-506-3p 0 0 1
chr2:218405332|218405544 hsa-miR-558 0 0 1
chr2:218405332|218405544 hsa-miR-603 0 0 1
chr2:218405332|218405544 hsa-miR-612 0 1 1
chr2:218405332|218405544 hsa-miR-650 0 0 1
chr2:218405332|218405544 hsa-miR-661 1 1 1
chr2:218405332|218405544 hsa-miR-541-5p 0 0 1
chr2:218405332|218405544 hsa-miR-541-3p 0 0 1
chr2:218405332|218405544 hsa-miR-887-5p 0 0 1
chr2:218405332|218405544 hsa-miR-887-3p 0 0 1
chr2:218405332|218405544 hsa-miR-1294 0 0 1
chr2:218405332|218405544 hsa-miR-1252-5p 0 0 1
chr2:218405332|218405544 hsa-miR-1252-3p 0 0 1
chr2:218405332|218405544 hsa-miR-129-5p 0 0 1
chr2:218405332|218405544 hsa-miR-296-5p 0 0 1
chr2:218405332|218405544 hsa-miR-654-5p 1 1 1
chr2:218405332|218405544 hsa-miR-361-3p 0 0 1
chr2:218405332|218405544 hsa-miR-1224-3p 0 1 1
chr2:218405332|218405544 hsa-miR-556-5p 0 0 1
chr2:218405332|218405544 hsa-miR-1260 0 0 1
chr2:218405332|218405544 hsa-miR-1280 0 0 1
chr2:218405332|218405544 hsa-miR-138 0 0 1
chr2:218405332|218405544 hsa-miR-124 0 0 1
chr2:218405332|218405544 hsa-miR-1285 0 0 1
chr2:218405332|218405544 hsa-miR-184 1 0 0
chr2:218405332|218405544 hsa-miR-527 1 0 0
chr2:218405332|218405544 hsa-miR-608 1 0 0
chr2:218405332|218405544 hsa-miR-762 1 0 0
chr2:218405332|218405544 hsa-miR-665 1 0 0
chr2:218405332|218405544 hsa-miR-1260a 0 1 0
chr2:218405332|218405544 hsa-miR-2861 1 1 0
chr2:218405332|218405544 hsa-miR-3132 1 0 0
chr2:218405332|218405544 hsa-miR-3147 1 0 0
chr2:218405332|218405544 hsa-miR-3154 1 0 0
chr2:218405332|218405544 hsa-miR-3197 1 0 0
chr2:218405332|218405544 hsa-miR-4298 1 0 0
chr2:218405332|218405544 hsa-miR-3612 0 1 0
chr2:218405332|218405544 hsa-miR-3936 1 1 0
chr2:218405332|218405544 hsa-miR-3945 1 0 0
chr2:218405332|218405544 hsa-miR-4448 0 1 0
chr2:218405332|218405544 hsa-miR-4462 1 0 0
chr2:218405332|218405544 hsa-miR-4487 0 1 0
chr2:218405332|218405544 hsa-miR-4502 0 1 0
chr2:218405332|218405544 hsa-miR-2392 0 1 0
chr2:218405332|218405544 hsa-miR-4651 1 0 0
chr2:218405332|218405544 hsa-miR-4656 1 0 0
chr2:218405332|218405544 hsa-miR-4675 1 0 0
chr2:218405332|218405544 hsa-miR-4688 1 0 0
chr2:218405332|218405544 hsa-miR-4739 1 0 0
chr2:218405332|218405544 hsa-miR-5090 1 1 0
chr2:218405332|218405544 hsa-miR-5194 1 0 0
chr2:218405332|218405544 hsa-miR-6081 1 0 0
chr2:218405332|218405544 hsa-miR-6090 1 0 0
chr2:218405332|218405544 hsa-miR-6133 1 0 0
chr2:218405332|218405544 hsa-miR-6860 0 1 0
chr2:218405332|218405544 hsa-miR-7974 1 0 0
chr2:218405332|218405544 hsa-miR-8085 1 0 0
chr2:218405332|218405544 hsa-miR-8089 1 0 0
chr2:218405332|218405544 hsa-miR-12119 1 0 0
chr2:218405332|218405544 hsa-miR-12120 1 0 0
chr2:218405332|218405544 hsa-miR-138-5p 0 1 0
chr2:218405332|218405544 hsa-miR-211-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6734-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6747-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6894-5p 1 0 0
chr2:218405332|218405544 hsa-miR-1236-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6757-5p 1 0 0
chr2:218405332|218405544 hsa-miR-7847-3p 1 1 0
chr2:218405332|218405544 hsa-miR-4695-5p 1 1 0
chr2:218405332|218405544 hsa-miR-4653-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6727-5p 1 0 0
chr2:218405332|218405544 hsa-miR-7845-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6742-5p 1 0 0
chr2:218405332|218405544 hsa-miR-3605-5p 1 0 0
chr2:218405332|218405544 hsa-miR-3151-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6772-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6796-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6732-5p 1 0 0
chr2:218405332|218405544 hsa-miR-3126-5p 1 1 0
chr2:218405332|218405544 hsa-miR-2467-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6782-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6810-5p 1 0 0
chr2:218405332|218405544 hsa-miR-939-3p 0 1 0
chr2:218405332|218405544 hsa-miR-1226-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4640-5p 1 0 0
chr2:218405332|218405544 hsa-miR-296-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6847-5p 0 1 0
chr2:218405332|218405544 hsa-miR-6834-5p 1 1 0
chr2:218405332|218405544 hsa-miR-4787-5p 1 0 0
chr2:218405332|218405544 hsa-miR-324-5p 1 0 0
chr2:218405332|218405544 hsa-miR-149-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6781-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6892-5p 1 0 0
chr2:218405332|218405544 hsa-miR-664b-5p 1 0 0
chr2:218405332|218405544 hsa-miR-423-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6818-5p 1 1 0
chr2:218405332|218405544 hsa-miR-5004-5p 0 1 0
chr2:218405332|218405544 hsa-miR-4433a-5p 0 1 0
chr2:218405332|218405544 hsa-miR-3156-3p 0 1 0
chr2:218405332|218405544 hsa-miR-124-3p 0 1 0
chr2:218405332|218405544 hsa-miR-1207-5p 1 0 0
chr2:218405332|218405544 hsa-miR-1233-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4763-3p 1 1 0
chr2:218405332|218405544 hsa-miR-6778-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6775-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6743-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6752-5p 1 1 0
chr2:218405332|218405544 hsa-miR-6756-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6803-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6813-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6819-5p 0 1 0
chr2:218405332|218405544 hsa-miR-6842-5p 1 0 0
chr2:218405332|218405544 hsa-miR-7110-5p 1 1 0
chr2:218405332|218405544 hsa-miR-10401-5p 1 0 0
chr2:218405332|218405544 hsa-miR-1249-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6722-3p 1 0 0
chr2:218405332|218405544 hsa-miR-6751-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6779-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6780a-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6797-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6808-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6875-5p 1 1 0
chr2:218405332|218405544 hsa-miR-3620-5p 1 0 0
chr2:218405332|218405544 hsa-miR-5189-5p 0 1 0
chr2:218405332|218405544 hsa-miR-5196-5p 1 0 0
chr2:218405332|218405544 hsa-miR-10526-3p 1 1 0
chr2:218405332|218405544 hsa-miR-4632-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4649-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4726-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4745-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6729-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6735-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6738-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6794-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6795-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6887-5p 1 0 0
chr2:218405332|218405544 hsa-miR-3187-5p 0 1 0
chr2:218405332|218405544 hsa-miR-1285-3p 0 1 0
chr2:218405332|218405544 hsa-miR-1914-3p 1 0 0
chr2:218405332|218405544 hsa-miR-4665-5p 1 0 0
chr2:218405332|218405544 hsa-miR-3173-3p 0 1 0
chr2:218405332|218405544 hsa-miR-6891-5p 0 1 0
chr2:218405332|218405544 hsa-miR-3184-5p 1 0 0
chr2:218405332|218405544 hsa-miR-6724-5p 1 0 0
chr2:218405332|218405544 hsa-miR-4756-5p 1 0 0
chr2:218405332|218405544 hsa-miR-518a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:218405332|218405544
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MGQGAQALSSVPHTPLLRSFIQKNIS
Nucleotide Sequence CTGGGCCAAGGGGCCCAGGCCCTGTCCTCTGTCCCTCACACCCCTTTGCTCCGTTCATTCATTCAAAAAAACATTTCTTGA
CircID chr2:218405332|218405544
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MSLTPLCSVHSFKKTFLEHLLCPAYARPTS
Nucleotide Sequence CTGTCCCTCACACCCCTTTGCTCCGTTCATTCATTCAAAAAAACATTTCTTGAGCACCTTCTGTGCCCAGCATATGCTAGGCCCACCAGCTAA
CircID chr2:218405332|218405544
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MSTFCAQHMLGPPAKCVWGVSTPAHQCLLAHPSPVPLGDL
Nucleotide Sequence TTGAGCACCTTCTGTGCCCAGCATATGCTAGGCCCACCAGCTAAGTGTGTGTGGGGGGTCTCTACGCCAGCTCATCAGTGCCTCCTTGCCCATCCTTCACCGGTGCCTTTGGGGGATCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab