CircRNA Information

General Information
circRNA Basic Information
CircID chr2:218638308|218638509
Strand -
CircType exon
Host Gene ENSG00000115568.14;
Algorism CIRI2;
Sequence CCTCTTCCTATACAGGAGGTGGGGCAGGCTTTCAGCCCTCAGGTCCAGTGTGGGGAGCGGCAGGAGCAGGAGGGCTGGGATCCTCCAGCTGCACATCATGCAGGTGCACTGTGGGGGTGGTGGGGTCTTTGCCCACACCCTGGTTTGGGTCGGCTTGGTCAGGGTGGTGCCTGCGTACGTGCTTGACCACCTGGAACTTTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:218638308|218638509 hsa-miR-148a-5p 0 0 1
chr2:218638308|218638509 hsa-miR-148a-3p 0 0 1
chr2:218638308|218638509 hsa-miR-152-5p 0 0 1
chr2:218638308|218638509 hsa-miR-152-3p 0 0 1
chr2:218638308|218638509 hsa-miR-370-5p 0 0 1
chr2:218638308|218638509 hsa-miR-370-3p 0 0 1
chr2:218638308|218638509 hsa-miR-148b-5p 0 0 1
chr2:218638308|218638509 hsa-miR-148b-3p 0 0 1
chr2:218638308|218638509 hsa-miR-492 0 1 1
chr2:218638308|218638509 hsa-miR-551a 0 0 1
chr2:218638308|218638509 hsa-miR-551b-5p 0 0 1
chr2:218638308|218638509 hsa-miR-551b-3p 0 0 1
chr2:218638308|218638509 hsa-miR-596 0 1 1
chr2:218638308|218638509 hsa-miR-1301-5p 0 0 1
chr2:218638308|218638509 hsa-miR-1301-3p 0 0 1
chr2:218638308|218638509 hsa-miR-765 0 0 1
chr2:218638308|218638509 hsa-miR-486-5p 0 0 1
chr2:218638308|218638509 hsa-miR-1224-3p 0 1 1
chr2:218638308|218638509 hsa-miR-1207-3p 0 0 1
chr2:218638308|218638509 hsa-miR-324-3p 0 0 1
chr2:218638308|218638509 hsa-miR-220b 0 0 1
chr2:218638308|218638509 hsa-miR-128 0 0 1
chr2:218638308|218638509 hsa-miR-323-5p 0 0 1
chr2:218638308|218638509 hsa-miR-422a 0 1 0
chr2:218638308|218638509 hsa-miR-637 0 1 0
chr2:218638308|218638509 hsa-miR-1913 0 1 0
chr2:218638308|218638509 hsa-miR-1976 1 1 0
chr2:218638308|218638509 hsa-miR-1260b 0 1 0
chr2:218638308|218638509 hsa-miR-4296 0 1 0
chr2:218638308|218638509 hsa-miR-378c 0 1 0
chr2:218638308|218638509 hsa-miR-4290 0 1 0
chr2:218638308|218638509 hsa-miR-3654 0 1 0
chr2:218638308|218638509 hsa-miR-3135b 0 1 0
chr2:218638308|218638509 hsa-miR-4493 0 1 0
chr2:218638308|218638509 hsa-miR-4535 0 1 0
chr2:218638308|218638509 hsa-miR-4656 1 1 0
chr2:218638308|218638509 hsa-miR-6079 0 1 0
chr2:218638308|218638509 hsa-miR-128-3p 0 1 0
chr2:218638308|218638509 hsa-miR-214-5p 0 1 0
chr2:218638308|218638509 hsa-miR-139-5p 0 1 0
chr2:218638308|218638509 hsa-miR-323a-5p 0 1 0
chr2:218638308|218638509 hsa-miR-4665-3p 1 0 0
chr2:218638308|218638509 hsa-miR-6747-5p 0 1 0
chr2:218638308|218638509 hsa-miR-210-5p 1 0 0
chr2:218638308|218638509 hsa-miR-593-5p 0 1 0
chr2:218638308|218638509 hsa-miR-3189-5p 1 0 0
chr2:218638308|218638509 hsa-miR-4728-3p 1 0 0
chr2:218638308|218638509 hsa-miR-6772-3p 1 1 0
chr2:218638308|218638509 hsa-miR-1226-5p 1 1 0
chr2:218638308|218638509 hsa-miR-4763-5p 0 1 0
chr2:218638308|218638509 hsa-miR-4667-3p 0 1 0
chr2:218638308|218638509 hsa-miR-1237-3p 0 1 0
chr2:218638308|218638509 hsa-miR-6743-3p 1 1 0
chr2:218638308|218638509 hsa-miR-660-3p 0 1 0
chr2:218638308|218638509 hsa-miR-4687-5p 0 1 0
chr2:218638308|218638509 hsa-miR-4732-3p 0 1 0
chr2:218638308|218638509 hsa-miR-584-3p 1 0 0
chr2:218638308|218638509 hsa-miR-4661-3p 0 1 0
chr2:218638308|218638509 hsa-miR-6804-3p 1 0 0
chr2:218638308|218638509 hsa-miR-3180-5p 1 0 0
chr2:218638308|218638509 hsa-miR-4758-3p 0 1 0
chr2:218638308|218638509 hsa-miR-1910-5p 0 1 0
chr2:218638308|218638509 hsa-miR-216a-3p 0 1 0
chr2:218638308|218638509 hsa-miR-6886-3p 0 1 0
chr2:218638308|218638509 hsa-miR-5195-5p 0 1 0
chr2:218638308|218638509 hsa-miR-3620-3p 0 1 0
chr2:218638308|218638509 hsa-miR-378a-3p 0 1 0
chr2:218638308|218638509 hsa-miR-4722-3p 1 0 0
chr2:218638308|218638509 hsa-miR-6893-3p 1 0 0
chr2:218638308|218638509 hsa-miR-9851-3p 0 1 0
chr2:218638308|218638509 hsa-miR-6511b-3p 0 1 0
chr2:218638308|218638509 hsa-miR-1234-3p 1 0 0
chr2:218638308|218638509 hsa-miR-6764-5p 0 1 0
chr2:218638308|218638509 hsa-miR-6715b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr2:218638308|218638509
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MWGWWGLCPHPGLGRLGQGGACVRA
Nucleotide Sequence CTGTGGGGGTGGTGGGGTCTTTGCCCACACCCTGGTTTGGGTCGGCTTGGTCAGGGTGGTGCCTGCGTACGTGCTTGA

CircID chr2:218638308|218638509
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MHIMQVHCGGGGVFAHTLVWVGLVRVVPAYVLDHLELL
Nucleotide Sequence CTGCACATCATGCAGGTGCACTGTGGGGGTGGTGGGGTCTTTGCCCACACCCTGGTTTGGGTCGGCTTGGTCAGGGTGGTGCCTGCGTACGTGCTTGACCACCTGGAACTTTTG

CircID chr2:218638308|218638509
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGSSSCTSCRCTVGVVGSLPTPWFGSAWSGWCLRTCLTTWNF
Nucleotide Sequence CTGGGATCCTCCAGCTGCACATCATGCAGGTGCACTGTGGGGGTGGTGGGGTCTTTGCCCACACCCTGGTTTGGGTCGGCTTGGTCAGGGTGGTGCCTGCGTACGTGCTTGACCACCTGGAACTTT

CircID chr2:218638308|218638509
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MTKPTQTRVWAKTPPPPQCTCMMCSWRIPALLLLPLPTLDLRAESLPHLLYRKR
Nucleotide Sequence CTGACCAAGCCGACCCAAACCAGGGTGTGGGCAAAGACCCCACCACCCCCACAGTGCACCTGCATGATGTGCAGCTGGAGGATCCCAGCCCTCCTGCTCCTGCCGCTCCCCACACTGGACCTGAGGGCTGAAAGCCTGCCCCACCTCCTGTATAGGAAGAGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites