CircRNA Information

General Information
circRNA Basic Information
CircID chr2:218719207|218719374
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTTGTGTGTCCCTCTCACGTGATACTTTCCCAAGGCTATCTCACACCACTGTTCACTTACCCTAGTGATATGCCCTATAAGCTTCATGATGGCTTTTATAGGAAATCTCTGGGGATCTTTAACCTCAAATACAGAGCCACGCTGGCAGAAGGGGGTGGGAAGAACC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:218719207|218719374 hsa-miR-21-5p 0 0 1
chr2:218719207|218719374 hsa-miR-21-3p 0 0 1
chr2:218719207|218719374 hsa-miR-384 0 0 1
chr2:218719207|218719374 hsa-miR-555 0 1 1
chr2:218719207|218719374 hsa-miR-760 1 1 1
chr2:218719207|218719374 hsa-miR-1237-5p 0 0 1
chr2:218719207|218719374 hsa-miR-1237-3p 0 0 1
chr2:218719207|218719374 hsa-miR-1202 0 0 1
chr2:218719207|218719374 hsa-miR-548l 0 0 1
chr2:218719207|218719374 hsa-miR-1304-5p 0 0 1
chr2:218719207|218719374 hsa-miR-1304-3p 0 0 1
chr2:218719207|218719374 hsa-miR-127-5p 0 1 1
chr2:218719207|218719374 hsa-miR-1224-3p 0 0 1
chr2:218719207|218719374 hsa-miR-188-3p 0 0 1
chr2:218719207|218719374 hsa-miR-34c-3p 0 0 1
chr2:218719207|218719374 hsa-miR-337-3p 0 0 1
chr2:218719207|218719374 hsa-miR-590-5p 0 0 1
chr2:218719207|218719374 hsa-miR-1260 0 0 1
chr2:218719207|218719374 hsa-miR-1280 0 0 1
chr2:218719207|218719374 hsa-miR-595 1 0 0
chr2:218719207|218719374 hsa-miR-1260a 0 1 0
chr2:218719207|218719374 hsa-miR-2278 1 0 0
chr2:218719207|218719374 hsa-miR-3138 1 1 0
chr2:218719207|218719374 hsa-miR-3147 1 0 0
chr2:218719207|218719374 hsa-miR-3153 1 1 0
chr2:218719207|218719374 hsa-miR-4298 1 0 0
chr2:218719207|218719374 hsa-miR-3945 0 1 0
chr2:218719207|218719374 hsa-miR-4491 1 0 0
chr2:218719207|218719374 hsa-miR-8057 0 1 0
chr2:218719207|218719374 hsa-miR-8060 0 1 0
chr2:218719207|218719374 hsa-miR-4433b-3p 1 0 0
chr2:218719207|218719374 hsa-miR-6728-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6873-5p 0 1 0
chr2:218719207|218719374 hsa-miR-6875-3p 1 1 0
chr2:218719207|218719374 hsa-miR-6742-5p 1 0 0
chr2:218719207|218719374 hsa-miR-3126-5p 0 1 0
chr2:218719207|218719374 hsa-miR-6786-5p 1 0 0
chr2:218719207|218719374 hsa-miR-4707-3p 1 0 0
chr2:218719207|218719374 hsa-miR-1229-5p 1 0 0
chr2:218719207|218719374 hsa-miR-2681-3p 0 1 0
chr2:218719207|218719374 hsa-miR-4640-3p 0 1 0
chr2:218719207|218719374 hsa-miR-1250-5p 1 0 0
chr2:218719207|218719374 hsa-miR-216a-3p 1 0 0
chr2:218719207|218719374 hsa-miR-5088-3p 0 1 0
chr2:218719207|218719374 hsa-miR-6738-3p 0 1 0
chr2:218719207|218719374 hsa-miR-4433a-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6734-3p 0 1 0
chr2:218719207|218719374 hsa-miR-6846-3p 1 0 0
chr2:218719207|218719374 hsa-miR-4727-5p 1 1 0
chr2:218719207|218719374 hsa-miR-6812-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6752-5p 1 0 0
chr2:218719207|218719374 hsa-miR-7110-5p 1 0 0
chr2:218719207|218719374 hsa-miR-10401-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6774-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6780a-5p 0 1 0
chr2:218719207|218719374 hsa-miR-6875-5p 0 1 0
chr2:218719207|218719374 hsa-miR-3127-3p 1 1 0
chr2:218719207|218719374 hsa-miR-6780b-5p 1 0 0
chr2:218719207|218719374 hsa-miR-4725-3p 1 0 0
chr2:218719207|218719374 hsa-miR-6855-5p 0 1 0
chr2:218719207|218719374 hsa-miR-6750-5p 1 0 0
chr2:218719207|218719374 hsa-miR-6756-3p 0 1 0
chr2:218719207|218719374 hsa-miR-6733-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:218719207|218719374
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MMAFIGNLWGSLTSNTEPRWQKGVGRT
Nucleotide Sequence ATGATGGCTTTTATAGGAAATCTCTGGGGATCTTTAACCTCAAATACAGAGCCACGCTGGCAGAAGGGGGTGGGAAGAACC
CircID chr2:218719207|218719374
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MFTYPSDMPYKLHDGFYRKSLGIFNLKYRATLAEGGGKN
Nucleotide Sequence CTGTTCACTTACCCTAGTGATATGCCCTATAAGCTTCATGATGGCTTTTATAGGAAATCTCTGGGGATCTTTAACCTCAAATACAGAGCCACGCTGGCAGAAGGGGGTGGGAAGAAC
CircID chr2:218719207|218719374
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MKLIGHITRVSEQWCEIALGKYHVRGTHN
Nucleotide Sequence ATGAAGCTTATAGGGCATATCACTAGGGTAAGTGAACAGTGGTGTGAGATAGCCTTGGGAAAGTATCACGTGAGAGGGACACACAAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab