CircRNA Information

General Information
circRNA Basic Information
CircID chr2:219420102|219420346
Strand +
CircType exon
Host Gene ENSG00000175084.10;
Algorism CIRI2;
Sequence CTCTTCATGCACTTTCTTAAGGAACGCGATCTCCTCGTTGAGAGATTCAATTCTGCGCTCCAGGTCAATGCGAGCTAGAGTAGCTGCATCCACGTCCTGGGAGAGGCCAAGCGAGAAGGACATGGTCACCGCCACCCAGGTGGGGCAGAGCAAGGCCAGAGGCCATGCAAGGGGAAAAGAAGGGCACTCACCGCTCGGAAGGCAGCCAAATTGTTCTCTGCTTCTTCCTTCAACTGAATCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:219420102|219420346 hsa-miR-17-5p 0 0 1
chr2:219420102|219420346 hsa-miR-17-3p 0 0 1
chr2:219420102|219420346 hsa-miR-20a-5p 0 0 1
chr2:219420102|219420346 hsa-miR-20a-3p 0 0 1
chr2:219420102|219420346 hsa-miR-93-5p 0 0 1
chr2:219420102|219420346 hsa-miR-93-3p 0 0 1
chr2:219420102|219420346 hsa-miR-106a-5p 0 0 1
chr2:219420102|219420346 hsa-miR-106a-3p 0 0 1
chr2:219420102|219420346 hsa-miR-192-5p 0 0 1
chr2:219420102|219420346 hsa-miR-192-3p 0 0 1
chr2:219420102|219420346 hsa-miR-215-5p 0 0 1
chr2:219420102|219420346 hsa-miR-215-3p 0 0 1
chr2:219420102|219420346 hsa-miR-150-5p 0 0 1
chr2:219420102|219420346 hsa-miR-150-3p 0 0 1
chr2:219420102|219420346 hsa-miR-106b-5p 0 0 1
chr2:219420102|219420346 hsa-miR-106b-3p 0 0 1
chr2:219420102|219420346 hsa-miR-20b-5p 0 0 1
chr2:219420102|219420346 hsa-miR-20b-3p 0 0 1
chr2:219420102|219420346 hsa-miR-519d-5p 0 0 1
chr2:219420102|219420346 hsa-miR-519d-3p 0 0 1
chr2:219420102|219420346 hsa-miR-591 0 1 1
chr2:219420102|219420346 hsa-miR-604 0 0 1
chr2:219420102|219420346 hsa-miR-619-5p 0 0 1
chr2:219420102|219420346 hsa-miR-619-3p 0 0 1
chr2:219420102|219420346 hsa-miR-631 0 0 1
chr2:219420102|219420346 hsa-miR-647 0 0 1
chr2:219420102|219420346 hsa-miR-1301-5p 0 0 1
chr2:219420102|219420346 hsa-miR-1301-3p 0 0 1
chr2:219420102|219420346 hsa-miR-216b-5p 0 0 1
chr2:219420102|219420346 hsa-miR-216b-3p 0 0 1
chr2:219420102|219420346 hsa-miR-938 0 0 1
chr2:219420102|219420346 hsa-miR-1237-5p 0 0 1
chr2:219420102|219420346 hsa-miR-1237-3p 0 0 1
chr2:219420102|219420346 hsa-miR-1293 0 0 1
chr2:219420102|219420346 hsa-miR-1248 0 0 1
chr2:219420102|219420346 hsa-miR-1251-5p 0 0 1
chr2:219420102|219420346 hsa-miR-1251-3p 0 0 1
chr2:219420102|219420346 hsa-miR-1252-5p 0 0 1
chr2:219420102|219420346 hsa-miR-1252-3p 0 0 1
chr2:219420102|219420346 hsa-miR-615-3p 0 0 1
chr2:219420102|219420346 hsa-miR-532-3p 0 0 1
chr2:219420102|219420346 hsa-miR-1224-3p 0 0 1
chr2:219420102|219420346 hsa-miR-324-3p 0 0 1
chr2:219420102|219420346 hsa-miR-519b-3p 0 0 1
chr2:219420102|219420346 hsa-miR-519c-3p 0 0 1
chr2:219420102|219420346 hsa-miR-151-5p 0 0 1
chr2:219420102|219420346 hsa-miR-720 0 0 1
chr2:219420102|219420346 hsa-miR-519a 0 0 1
chr2:219420102|219420346 hsa-miR-623 0 1 0
chr2:219420102|219420346 hsa-miR-151b 0 1 0
chr2:219420102|219420346 hsa-miR-3176 0 1 0
chr2:219420102|219420346 hsa-miR-4312 0 1 0
chr2:219420102|219420346 hsa-miR-3658 0 1 0
chr2:219420102|219420346 hsa-miR-3661 0 1 0
chr2:219420102|219420346 hsa-miR-3919 0 1 0
chr2:219420102|219420346 hsa-miR-4651 1 0 0
chr2:219420102|219420346 hsa-miR-4741 1 0 0
chr2:219420102|219420346 hsa-miR-5690 0 1 0
chr2:219420102|219420346 hsa-miR-6840-3p 0 1 0
chr2:219420102|219420346 hsa-miR-504-3p 1 0 0
chr2:219420102|219420346 hsa-miR-1247-3p 1 0 0
chr2:219420102|219420346 hsa-miR-3194-3p 0 1 0
chr2:219420102|219420346 hsa-miR-7851-3p 0 1 0
chr2:219420102|219420346 hsa-miR-6762-3p 1 0 0
chr2:219420102|219420346 hsa-miR-6765-3p 0 1 0
chr2:219420102|219420346 hsa-miR-3150b-3p 0 1 0
chr2:219420102|219420346 hsa-miR-1909-5p 1 0 0
chr2:219420102|219420346 hsa-miR-3691-5p 0 1 0
chr2:219420102|219420346 hsa-miR-4764-5p 0 1 0
chr2:219420102|219420346 hsa-miR-4756-3p 1 0 0
chr2:219420102|219420346 hsa-miR-4717-3p 1 1 0
chr2:219420102|219420346 hsa-miR-6878-3p 0 1 0
chr2:219420102|219420346 hsa-miR-6830-3p 1 1 0
chr2:219420102|219420346 hsa-miR-6864-5p 0 1 0
chr2:219420102|219420346 hsa-miR-4758-3p 1 1 0
chr2:219420102|219420346 hsa-miR-4746-3p 1 0 0
chr2:219420102|219420346 hsa-miR-6886-3p 1 1 0
chr2:219420102|219420346 hsa-miR-5088-3p 0 1 0
chr2:219420102|219420346 hsa-miR-5001-5p 1 0 0
chr2:219420102|219420346 hsa-miR-7107-5p 1 0 0
chr2:219420102|219420346 hsa-miR-6797-5p 1 1 0
chr2:219420102|219420346 hsa-miR-3127-3p 1 0 0
chr2:219420102|219420346 hsa-miR-4685-5p 0 1 0
chr2:219420102|219420346 hsa-miR-6877-3p 0 1 0
chr2:219420102|219420346 hsa-miR-6876-5p 0 1 0
chr2:219420102|219420346 hsa-miR-4667-5p 1 0 0
chr2:219420102|219420346 hsa-miR-4757-5p 0 1 0
chr2:219420102|219420346 hsa-miR-6805-3p 0 1 0
chr2:219420102|219420346 hsa-miR-6775-3p 1 0 0
chr2:219420102|219420346 hsa-miR-3059-5p 1 0 0
chr2:219420102|219420346 hsa-miR-6744-3p 0 1 0
chr2:219420102|219420346 hsa-miR-33b-3p 1 0 0
chr2:219420102|219420346 hsa-miR-151a-5p 0 1 0
chr2:219420102|219420346 hsa-miR-6824-3p 1 1 0
chr2:219420102|219420346 hsa-miR-3922-3p 0 1 0
chr2:219420102|219420346 hsa-miR-6764-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:219420102|219420346
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MGEAKREGHGHRHPGGAEQGQRPCKGKRRALTARKAAKLFSASSFN
Nucleotide Sequence CTGGGAGAGGCCAAGCGAGAAGGACATGGTCACCGCCACCCAGGTGGGGCAGAGCAAGGCCAGAGGCCATGCAAGGGGAAAAGAAGGGCACTCACCGCTCGGAAGGCAGCCAAATTGTTCTCTGCTTCTTCCTTCAACTGA
CircID chr2:219420102|219420346
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MRDSILRSRSMRARVAASTSWERPSEKDMVTATQVGQSKARGHARGKEGHSPLGRQPNCSLLLPSTESP
Nucleotide Sequence TTGAGAGATTCAATTCTGCGCTCCAGGTCAATGCGAGCTAGAGTAGCTGCATCCACGTCCTGGGAGAGGCCAAGCGAGAAGGACATGGTCACCGCCACCCAGGTGGGGCAGAGCAAGGCCAGAGGCCATGCAAGGGGAAAAGAAGGGCACTCACCGCTCGGAAGGCAGCCAAATTGTTCTCTGCTTCTTCCTTCAACTGAATCTCCT
CircID chr2:219420102|219420346
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MHPRPGRGQARRTWSPPPRWGRARPEAMQGEKKGTHRSEGSQIVLCFFLQLNLL
Nucleotide Sequence CTGCATCCACGTCCTGGGAGAGGCCAAGCGAGAAGGACATGGTCACCGCCACCCAGGTGGGGCAGAGCAAGGCCAGAGGCCATGCAAGGGGAAAAGAAGGGCACTCACCGCTCGGAAGGCAGCCAAATTGTTCTCTGCTTCTTCCTTCAACTGAATCTCCTC
CircID chr2:219420102|219420346
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MKEEAENNLAAFRAVSALLFPLHGLWPCSAPPGWR
Nucleotide Sequence TTGAAGGAAGAAGCAGAGAACAATTTGGCTGCCTTCCGAGCGGTGAGTGCCCTTCTTTTCCCCTTGCATGGCCTCTGGCCTTGCTCTGCCCCACCTGGGTGGCGGTGA
CircID chr2:219420102|219420346
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MASGLALPHLGGGDHVLLAWPLPGRGCSYSSSH
Nucleotide Sequence ATGGCCTCTGGCCTTGCTCTGCCCCACCTGGGTGGCGGTGACCATGTCCTTCTCGCTTGGCCTCTCCCAGGACGTGGATGCAGCTACTCTAGCTCGCATTGA
CircID chr2:219420102|219420346
ORF Type ORF6
Protein Length 53
Nucleotide Length 159
Protein Sequence MALLCPTWVAVTMSFSLGLSQDVDAATLARIDLERRIESLNEEIAFLKKVHEE
Nucleotide Sequence CTGGCCTTGCTCTGCCCCACCTGGGTGGCGGTGACCATGTCCTTCTCGCTTGGCCTCTCCCAGGACGTGGATGCAGCTACTCTAGCTCGCATTGACCTGGAGCGCAGAATTGAATCTCTCAACGAGGAGATCGCGTTCCTTAAGAAAGTGCATGAAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab