CircRNA Information

General Information
circRNA Basic Information
CircID chr2:219426232|219426426
Strand +
CircType exon
Host Gene ENSG00000175084.10;
Algorism CIRI2;
Sequence CTGCCTGGCTTTCTCTCTCCTGGGCTAGGGGCTGGGGAGGTCTGCGGGGCTCAGTCCTGGCCCTGCAGTATCCCAACACCCTGCTCTGGGGCTGTCTCCAGAGCCAAAGGCTAGTGCCTGAGGTCACAGAGGTGGGAGGGACAGGGCCACCGCTCCCGCCTGGGCTCCATCCAGCACAAGAGCCAGGCTCACTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:219426232|219426426 hsa-miR-217-5p 0 0 1
chr2:219426232|219426426 hsa-miR-217-3p 0 0 1
chr2:219426232|219426426 hsa-miR-149-5p 0 0 1
chr2:219426232|219426426 hsa-miR-149-3p 0 0 1
chr2:219426232|219426426 hsa-miR-185-5p 0 0 1
chr2:219426232|219426426 hsa-miR-185-3p 0 0 1
chr2:219426232|219426426 hsa-miR-328-5p 0 0 1
chr2:219426232|219426426 hsa-miR-328-3p 0 0 1
chr2:219426232|219426426 hsa-miR-581 0 0 1
chr2:219426232|219426426 hsa-miR-609 0 0 1
chr2:219426232|219426426 hsa-miR-665 0 1 1
chr2:219426232|219426426 hsa-miR-760 0 0 1
chr2:219426232|219426426 hsa-miR-663b 0 1 1
chr2:219426232|219426426 hsa-miR-1205 0 1 1
chr2:219426232|219426426 hsa-miR-1287-5p 0 0 1
chr2:219426232|219426426 hsa-miR-1287-3p 0 0 1
chr2:219426232|219426426 hsa-miR-1291 0 0 1
chr2:219426232|219426426 hsa-miR-1225-3p 0 1 1
chr2:219426232|219426426 hsa-miR-532-3p 0 0 1
chr2:219426232|219426426 hsa-miR-146b-3p 0 0 1
chr2:219426232|219426426 hsa-miR-339-5p 0 1 1
chr2:219426232|219426426 hsa-miR-1224-3p 0 1 1
chr2:219426232|219426426 hsa-miR-769-3p 0 0 1
chr2:219426232|219426426 hsa-miR-509-3-5p 0 0 1
chr2:219426232|219426426 hsa-miR-509-5p 0 0 1
chr2:219426232|219426426 hsa-miR-450b-3p 0 0 1
chr2:219426232|219426426 hsa-miR-1260 0 0 1
chr2:219426232|219426426 hsa-miR-1280 0 0 1
chr2:219426232|219426426 hsa-miR-1233 0 0 1
chr2:219426232|219426426 hsa-miR-218 0 0 1
chr2:219426232|219426426 hsa-miR-516b 0 0 1
chr2:219426232|219426426 hsa-miR-1260a 0 1 0
chr2:219426232|219426426 hsa-miR-2278 0 1 0
chr2:219426232|219426426 hsa-miR-2861 1 0 0
chr2:219426232|219426426 hsa-miR-1260b 0 1 0
chr2:219426232|219426426 hsa-miR-3169 0 1 0
chr2:219426232|219426426 hsa-miR-4306 0 1 0
chr2:219426232|219426426 hsa-miR-4323 0 1 0
chr2:219426232|219426426 hsa-miR-4269 1 0 0
chr2:219426232|219426426 hsa-miR-3918 0 1 0
chr2:219426232|219426426 hsa-miR-1268b 1 0 0
chr2:219426232|219426426 hsa-miR-4418 0 1 0
chr2:219426232|219426426 hsa-miR-4425 0 1 0
chr2:219426232|219426426 hsa-miR-4644 0 1 0
chr2:219426232|219426426 hsa-miR-4656 0 1 0
chr2:219426232|219426426 hsa-miR-4663 0 1 0
chr2:219426232|219426426 hsa-miR-6132 0 1 0
chr2:219426232|219426426 hsa-miR-8057 0 1 0
chr2:219426232|219426426 hsa-miR-8089 1 0 0
chr2:219426232|219426426 hsa-miR-6749-3p 0 1 0
chr2:219426232|219426426 hsa-miR-4700-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6854-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4768-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6089 1 0 0
chr2:219426232|219426426 hsa-miR-659-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6763-3p 0 1 0
chr2:219426232|219426426 hsa-miR-4640-5p 1 1 0
chr2:219426232|219426426 hsa-miR-6749-5p 1 0 0
chr2:219426232|219426426 hsa-miR-6878-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4740-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4646-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6895-5p 0 1 0
chr2:219426232|219426426 hsa-miR-744-5p 0 1 0
chr2:219426232|219426426 hsa-miR-6501-3p 0 1 0
chr2:219426232|219426426 hsa-miR-518c-5p 0 1 0
chr2:219426232|219426426 hsa-miR-6857-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6748-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6779-3p 0 1 0
chr2:219426232|219426426 hsa-miR-758-3p 0 1 0
chr2:219426232|219426426 hsa-miR-4763-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6816-5p 1 0 0
chr2:219426232|219426426 hsa-miR-6836-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4685-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4726-5p 0 1 0
chr2:219426232|219426426 hsa-miR-4745-5p 1 0 0
chr2:219426232|219426426 hsa-miR-939-5p 0 1 0
chr2:219426232|219426426 hsa-miR-6799-3p 0 1 0
chr2:219426232|219426426 hsa-miR-10398-3p 1 0 0
chr2:219426232|219426426 hsa-miR-6724-5p 1 0 0
chr2:219426232|219426426 hsa-miR-6791-5p 1 0 0
chr2:219426232|219426426 hsa-miR-4757-5p 1 0 0
chr2:219426232|219426426 hsa-miR-6775-3p 0 1 0
chr2:219426232|219426426 hsa-miR-6751-3p 0 1 0
chr2:219426232|219426426 hsa-miR-10394-5p 0 1 0
chr2:219426232|219426426 hsa-miR-6715b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:219426232|219426426
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LPGFLSPGLGAGEVCGAQSWPCSIPTPCSGAVSRAKG
Nucleotide Sequence CTGCCTGGCTTTCTCTCTCCTGGGCTAGGGGCTGGGGAGGTCTGCGGGGCTCAGTCCTGGCCCTGCAGTATCCCAACACCCTGCTCTGGGGCTGTCTCCAGAGCCAAAGGCTAG
CircID chr2:219426232|219426426
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MRSQRWEGQGHRSRLGSIQHKSQAHS
Nucleotide Sequence CTGAGGTCACAGAGGTGGGAGGGACAGGGCCACCGCTCCCGCCTGGGCTCCATCCAGCACAAGAGCCAGGCTCACTCA
CircID chr2:219426232|219426426
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRSAGLSPGPAVSQHPALGLSPEPKASA
Nucleotide Sequence CTGGGGAGGTCTGCGGGGCTCAGTCCTGGCCCTGCAGTATCCCAACACCCTGCTCTGGGGCTGTCTCCAGAGCCAAAGGCTAGTGCCTGA
CircID chr2:219426232|219426426
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MRGSVLALQYPNTLLWGCLQSQRLVPEVTEVGGTGPPLPPGLHPAQEPGSL
Nucleotide Sequence CTGCGGGGCTCAGTCCTGGCCCTGCAGTATCCCAACACCCTGCTCTGGGGCTGTCTCCAGAGCCAAAGGCTAGTGCCTGAGGTCACAGAGGTGGGAGGGACAGGGCCACCGCTCCCGCCTGGGCTCCATCCAGCACAAGAGCCAGGCTCACTC
CircID chr2:219426232|219426426
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MGYCRARTEPRRPPQPLAQERESQA
Nucleotide Sequence TTGGGATACTGCAGGGCCAGGACTGAGCCCCGCAGACCTCCCCAGCCCCTAGCCCAGGAGAGAGAAAGCCAGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab