CircRNA Information

General Information
circRNA Basic Information
CircID chr2:219466514|219466755
Strand +
CircType exon
Host Gene ENSG00000072195.13;
Algorism CIRI2;
Sequence TCCCTCATTCCCAGACAGAGCACCCCAGCCCTGACAGAGAAGGAGGGGGCCCCAAATGGGCCCTAAACCTGCCAGGGCCAGGGCTCAGCCAGGCTGTTCATCAGCACAGAGCCTGGGGCCTCTGGCTTTTGGTCTTTTGTGAAATAGAAAGTGTTGTGCCATTCGAAACCCATTTCTAGAATGGTCAGTGTCCTAACCCTTCCTGGTAAGGCCTTTGTCAACAGCCCCTGCTCCTTGGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:219466514|219466755 hsa-miR-183-5p 0 0 1
chr2:219466514|219466755 hsa-miR-183-3p 0 0 1
chr2:219466514|219466755 hsa-miR-328-5p 0 0 1
chr2:219466514|219466755 hsa-miR-328-3p 0 0 1
chr2:219466514|219466755 hsa-miR-484 0 0 1
chr2:219466514|219466755 hsa-miR-591 0 0 1
chr2:219466514|219466755 hsa-miR-608 1 0 1
chr2:219466514|219466755 hsa-miR-629-5p 0 0 1
chr2:219466514|219466755 hsa-miR-629-3p 0 0 1
chr2:219466514|219466755 hsa-miR-657 0 0 1
chr2:219466514|219466755 hsa-miR-1296-5p 0 0 1
chr2:219466514|219466755 hsa-miR-1296-3p 0 0 1
chr2:219466514|219466755 hsa-miR-760 0 0 1
chr2:219466514|219466755 hsa-miR-942-5p 0 0 1
chr2:219466514|219466755 hsa-miR-942-3p 0 0 1
chr2:219466514|219466755 hsa-miR-1231 0 0 1
chr2:219466514|219466755 hsa-miR-1237-5p 0 0 1
chr2:219466514|219466755 hsa-miR-1237-3p 0 0 1
chr2:219466514|219466755 hsa-miR-1291 0 0 1
chr2:219466514|219466755 hsa-miR-1248 0 0 1
chr2:219466514|219466755 hsa-miR-1258 0 0 1
chr2:219466514|219466755 hsa-miR-1267 0 0 1
chr2:219466514|219466755 hsa-miR-513b-5p 0 0 1
chr2:219466514|219466755 hsa-miR-513b-3p 0 0 1
chr2:219466514|219466755 hsa-miR-1197 0 0 1
chr2:219466514|219466755 hsa-miR-1225-3p 0 0 1
chr2:219466514|219466755 hsa-miR-296-5p 0 0 1
chr2:219466514|219466755 hsa-miR-1207-5p 1 0 1
chr2:219466514|219466755 hsa-miR-342-5p 1 0 1
chr2:219466514|219466755 hsa-miR-518d-5p 0 0 1
chr2:219466514|219466755 hsa-miR-519b-5p 0 0 1
chr2:219466514|219466755 hsa-miR-519c-5p 0 0 1
chr2:219466514|219466755 hsa-miR-520c-5p 0 0 1
chr2:219466514|219466755 hsa-miR-1233 0 0 1
chr2:219466514|219466755 hsa-miR-526a 0 0 1
chr2:219466514|219466755 hsa-miR-762 1 0 0
chr2:219466514|219466755 hsa-miR-4270 1 0 0
chr2:219466514|219466755 hsa-miR-4508 1 0 0
chr2:219466514|219466755 hsa-miR-1587 1 0 0
chr2:219466514|219466755 hsa-miR-4651 1 0 0
chr2:219466514|219466755 hsa-miR-4656 1 0 0
chr2:219466514|219466755 hsa-miR-4739 1 0 0
chr2:219466514|219466755 hsa-miR-4741 1 0 0
chr2:219466514|219466755 hsa-miR-5787 1 0 0
chr2:219466514|219466755 hsa-miR-6085 1 0 0
chr2:219466514|219466755 hsa-miR-6132 1 0 0
chr2:219466514|219466755 hsa-miR-6747-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6727-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6721-5p 1 0 0
chr2:219466514|219466755 hsa-miR-2467-5p 1 0 0
chr2:219466514|219466755 hsa-miR-615-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6784-5p 1 0 0
chr2:219466514|219466755 hsa-miR-4640-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6749-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6830-5p 1 0 0
chr2:219466514|219466755 hsa-miR-7160-3p 1 0 0
chr2:219466514|219466755 hsa-miR-3922-5p 1 0 0
chr2:219466514|219466755 hsa-miR-7112-3p 1 0 0
chr2:219466514|219466755 hsa-miR-3160-5p 1 0 0
chr2:219466514|219466755 hsa-miR-4763-3p 1 0 0
chr2:219466514|219466755 hsa-miR-6812-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6726-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6743-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6752-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6756-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6813-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6722-3p 1 0 0
chr2:219466514|219466755 hsa-miR-3620-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6836-5p 1 0 0
chr2:219466514|219466755 hsa-miR-6848-5p 1 0 0
chr2:219466514|219466755 hsa-miR-939-5p 1 0 0
chr2:219466514|219466755 hsa-miR-3940-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:219466514|219466755
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MCHSKPISRMVSVLTLPGKAFVNSPCSLG
Nucleotide Sequence TTGTGCCATTCGAAACCCATTTCTAGAATGGTCAGTGTCCTAACCCTTCCTGGTAAGGCCTTTGTCAACAGCCCCTGCTCCTTGGGC
CircID chr2:219466514|219466755
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MGPKPARARAQPGCSSAQSLGPLAFGLL
Nucleotide Sequence ATGGGCCCTAAACCTGCCAGGGCCAGGGCTCAGCCAGGCTGTTCATCAGCACAGAGCCTGGGGCCTCTGGCTTTTGGTCTTTTGTGA
CircID chr2:219466514|219466755
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MPGPGLSQAVHQHRAWGLWLLVFCEIESVVPFETHF
Nucleotide Sequence CTGCCAGGGCCAGGGCTCAGCCAGGCTGTTCATCAGCACAGAGCCTGGGGCCTCTGGCTTTTGGTCTTTTGTGAAATAGAAAGTGTTGTGCCATTCGAAACCCATTTCTAG
CircID chr2:219466514|219466755
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MLTKALPGRVRTLTILEMGFEWHNTFYFTKDQKPEAPGSVLMNSLAEPWPWQV
Nucleotide Sequence CTGTTGACAAAGGCCTTACCAGGAAGGGTTAGGACACTGACCATTCTAGAAATGGGTTTCGAATGGCACAACACTTTCTATTTCACAAAAGACCAAAAGCCAGAGGCCCCAGGCTCTGTGCTGATGAACAGCCTGGCTGAGCCCTGGCCCTGGCAGGTTTAG
CircID chr2:219466514|219466755
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MSPGPGRFRAHLGPPPSLSGLGCSVWE
Nucleotide Sequence CTGAGCCCTGGCCCTGGCAGGTTTAGGGCCCATTTGGGGCCCCCTCCTTCTCTGTCAGGGCTGGGGTGCTCTGTCTGGGAATGA
CircID chr2:219466514|219466755
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MAQHFLFHKRPKARGPRLCADEQPG
Nucleotide Sequence ATGGCACAACACTTTCTATTTCACAAAAGACCAAAAGCCAGAGGCCCCAGGCTCTGTGCTGATGAACAGCCTGGCTGA
CircID chr2:219466514|219466755
ORF Type ORF7
Protein Length 27
Nucleotide Length 81
Protein Sequence MALAGLGPIWGPLLLCQGWGALSGNEG
Nucleotide Sequence CTGGCCCTGGCAGGTTTAGGGCCCATTTGGGGCCCCCTCCTTCTCTGTCAGGGCTGGGGTGCTCTGTCTGGGAATGAGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab