CircRNA Information

General Information
circRNA Basic Information
CircID chr2:219562402|219562674
Strand -
CircType exon
Host Gene ENSG00000124006.13;
Algorism CIRI2;
Sequence CTGTGACGGTGACAGTGAAGGAGGCCGACTCATCGTCAATTTCACACAAGTACTCGCCGGAGTCCTCGAGCTGGACAGCGGGCAGCACCAGGCGGCGGACAGTGTCTTCCTTCTGCAGGAGCAGCGCGGGGCTCTCCACCACCTCCTCTCCATCCTTGGTCCAGCGCACCTCTGCCCAGGGCCGGCATAGCTCACAGGTCAGCACCACACGCTCCAGGCGCACGGCTGCCACATACACCTTGCCGCTGGGATACACGATCCACGAGGAGACGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:219562402|219562674 hsa-miR-198 0 0 1
chr2:219562402|219562674 hsa-miR-205-5p 0 0 1
chr2:219562402|219562674 hsa-miR-205-3p 0 0 1
chr2:219562402|219562674 hsa-miR-185-5p 0 0 1
chr2:219562402|219562674 hsa-miR-185-3p 0 0 1
chr2:219562402|219562674 hsa-miR-567 0 0 1
chr2:219562402|219562674 hsa-miR-581 0 0 1
chr2:219562402|219562674 hsa-miR-610 1 0 1
chr2:219562402|219562674 hsa-miR-611 0 1 1
chr2:219562402|219562674 hsa-miR-612 0 1 1
chr2:219562402|219562674 hsa-miR-631 0 0 1
chr2:219562402|219562674 hsa-miR-298 0 1 1
chr2:219562402|219562674 hsa-miR-297 0 1 1
chr2:219562402|219562674 hsa-miR-1234-3p 0 0 1
chr2:219562402|219562674 hsa-miR-1208 0 0 1
chr2:219562402|219562674 hsa-miR-1291 0 0 1
chr2:219562402|219562674 hsa-miR-1252-5p 0 0 1
chr2:219562402|219562674 hsa-miR-1252-3p 0 0 1
chr2:219562402|219562674 hsa-miR-1234 0 0 1
chr2:219562402|219562674 hsa-miR-1225-3p 0 1 1
chr2:219562402|219562674 hsa-miR-885-3p 0 0 1
chr2:219562402|219562674 hsa-miR-299-3p 0 0 1
chr2:219562402|219562674 hsa-miR-628-5p 0 0 1
chr2:219562402|219562674 hsa-miR-151-5p 0 0 1
chr2:219562402|219562674 hsa-miR-7 0 0 1
chr2:219562402|219562674 hsa-miR-1285 0 0 1
chr2:219562402|219562674 hsa-miR-1254 0 0 1
chr2:219562402|219562674 hsa-miR-147 0 0 1
chr2:219562402|219562674 hsa-miR-346 1 0 0
chr2:219562402|219562674 hsa-miR-608 1 0 0
chr2:219562402|219562674 hsa-miR-661 1 0 0
chr2:219562402|219562674 hsa-miR-762 1 0 0
chr2:219562402|219562674 hsa-miR-1286 1 0 0
chr2:219562402|219562674 hsa-miR-1265 1 0 0
chr2:219562402|219562674 hsa-miR-1469 1 0 0
chr2:219562402|219562674 hsa-miR-711 1 0 0
chr2:219562402|219562674 hsa-miR-2861 1 0 0
chr2:219562402|219562674 hsa-miR-3131 1 0 0
chr2:219562402|219562674 hsa-miR-3132 1 0 0
chr2:219562402|219562674 hsa-miR-3138 1 0 0
chr2:219562402|219562674 hsa-miR-1193 1 0 0
chr2:219562402|219562674 hsa-miR-378c 1 0 0
chr2:219562402|219562674 hsa-miR-4257 0 1 0
chr2:219562402|219562674 hsa-miR-4267 0 1 0
chr2:219562402|219562674 hsa-miR-3907 1 0 0
chr2:219562402|219562674 hsa-miR-3911 1 0 0
chr2:219562402|219562674 hsa-miR-1268b 1 0 0
chr2:219562402|219562674 hsa-miR-3135b 1 0 0
chr2:219562402|219562674 hsa-miR-4505 1 0 0
chr2:219562402|219562674 hsa-miR-2392 1 1 0
chr2:219562402|219562674 hsa-miR-4521 1 0 0
chr2:219562402|219562674 hsa-miR-4534 0 1 0
chr2:219562402|219562674 hsa-miR-1587 1 0 0
chr2:219562402|219562674 hsa-miR-4656 1 0 0
chr2:219562402|219562674 hsa-miR-4706 1 0 0
chr2:219562402|219562674 hsa-miR-4721 1 0 0
chr2:219562402|219562674 hsa-miR-4734 1 0 0
chr2:219562402|219562674 hsa-miR-4739 1 0 0
chr2:219562402|219562674 hsa-miR-4741 1 0 0
chr2:219562402|219562674 hsa-miR-6086 1 0 0
chr2:219562402|219562674 hsa-miR-6134 0 1 0
chr2:219562402|219562674 hsa-miR-6860 1 1 0
chr2:219562402|219562674 hsa-miR-9718 1 1 0
chr2:219562402|219562674 hsa-miR-9899 1 0 0
chr2:219562402|219562674 hsa-miR-6734-5p 1 0 0
chr2:219562402|219562674 hsa-miR-1287-5p 1 1 0
chr2:219562402|219562674 hsa-miR-6765-5p 1 0 0
chr2:219562402|219562674 hsa-miR-7106-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6825-5p 1 1 0
chr2:219562402|219562674 hsa-miR-6894-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6799-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6728-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6757-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4709-3p 1 0 0
chr2:219562402|219562674 hsa-miR-197-5p 1 0 0
chr2:219562402|219562674 hsa-miR-3605-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6782-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6821-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4707-3p 1 0 0
chr2:219562402|219562674 hsa-miR-1229-5p 1 0 0
chr2:219562402|219562674 hsa-miR-296-3p 1 0 0
chr2:219562402|219562674 hsa-miR-3677-3p 1 0 0
chr2:219562402|219562674 hsa-miR-4787-5p 1 0 0
chr2:219562402|219562674 hsa-miR-149-3p 1 0 0
chr2:219562402|219562674 hsa-miR-3158-5p 0 1 0
chr2:219562402|219562674 hsa-miR-4800-5p 0 1 0
chr2:219562402|219562674 hsa-miR-4776-5p 1 1 0
chr2:219562402|219562674 hsa-miR-574-5p 1 0 0
chr2:219562402|219562674 hsa-miR-1250-5p 1 0 0
chr2:219562402|219562674 hsa-miR-3619-3p 1 0 0
chr2:219562402|219562674 hsa-miR-6720-3p 0 1 0
chr2:219562402|219562674 hsa-miR-4746-3p 1 0 0
chr2:219562402|219562674 hsa-miR-6837-3p 0 1 0
chr2:219562402|219562674 hsa-miR-4761-5p 0 1 0
chr2:219562402|219562674 hsa-miR-1914-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6760-3p 0 1 0
chr2:219562402|219562674 hsa-miR-10400-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4763-3p 1 1 0
chr2:219562402|219562674 hsa-miR-5001-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6737-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6752-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6803-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6819-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6851-5p 1 1 0
chr2:219562402|219562674 hsa-miR-7110-5p 1 0 0
chr2:219562402|219562674 hsa-miR-1249-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6722-3p 1 1 0
chr2:219562402|219562674 hsa-miR-6774-5p 0 1 0
chr2:219562402|219562674 hsa-miR-6808-5p 1 0 0
chr2:219562402|219562674 hsa-miR-3620-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4728-5p 1 0 0
chr2:219562402|219562674 hsa-miR-5189-5p 1 1 0
chr2:219562402|219562674 hsa-miR-1237-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4685-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6729-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6735-5p 1 1 0
chr2:219562402|219562674 hsa-miR-675-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6858-5p 1 0 0
chr2:219562402|219562674 hsa-miR-3187-5p 1 1 0
chr2:219562402|219562674 hsa-miR-6831-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6856-5p 1 0 0
chr2:219562402|219562674 hsa-miR-1271-3p 1 0 0
chr2:219562402|219562674 hsa-miR-6791-3p 0 1 0
chr2:219562402|219562674 hsa-miR-324-3p 1 0 0
chr2:219562402|219562674 hsa-miR-6891-5p 1 0 0
chr2:219562402|219562674 hsa-miR-6791-5p 1 0 0
chr2:219562402|219562674 hsa-miR-4757-5p 0 1 0
chr2:219562402|219562674 hsa-miR-6805-3p 1 0 0
chr2:219562402|219562674 hsa-miR-6829-3p 0 1 0
chr2:219562402|219562674 hsa-miR-10392-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:219562402|219562674
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MPRAGIAHRSAPHAPGARLPHTPCRWDTRSTRRR
Nucleotide Sequence CTGCCCAGGGCCGGCATAGCTCACAGGTCAGCACCACACGCTCCAGGCGCACGGCTGCCACATACACCTTGCCGCTGGGATACACGATCCACGAGGAGACGT
CircID chr2:219562402|219562674
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MDSGQHQAADSVFLLQEQRGALHHLLSILGPAHLCPGPA
Nucleotide Sequence CTGGACAGCGGGCAGCACCAGGCGGCGGACAGTGTCTTCCTTCTGCAGGAGCAGCGCGGGGCTCTCCACCACCTCCTCTCCATCCTTGGTCCAGCGCACCTCTGCCCAGGGCCGGCATAG
CircID chr2:219562402|219562674
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MVQRTSAQGRHSSQVSTTRSRRTAATYTLPLGYTIHEET
Nucleotide Sequence TTGGTCCAGCGCACCTCTGCCCAGGGCCGGCATAGCTCACAGGTCAGCACCACACGCTCCAGGCGCACGGCTGCCACATACACCTTGCCGCTGGGATACACGATCCACGAGGAGACG
CircID chr2:219562402|219562674
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MERRWWRAPRCSCRRKTLSAAWCCPLSSSRTPASTCVKLTMSRPPSLSPSQ
Nucleotide Sequence ATGGAGAGGAGGTGGTGGAGAGCCCCGCGCTGCTCCTGCAGAAGGAAGACACTGTCCGCCGCCTGGTGCTGCCCGCTGTCCAGCTCGAGGACTCCGGCGAGTACTTGTGTGAAATTGACGATGAGTCGGCCTCCTTCACTGTCACCGTCACAG
CircID chr2:219562402|219562674
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MPALGRGALDQGWRGGGGEPRAAPAEGRHCPPPGAARCPARGLRRVLV
Nucleotide Sequence ATGCCGGCCCTGGGCAGAGGTGCGCTGGACCAAGGATGGAGAGGAGGTGGTGGAGAGCCCCGCGCTGCTCCTGCAGAAGGAAGACACTGTCCGCCGCCTGGTGCTGCCCGCTGTCCAGCTCGAGGACTCCGGCGAGTACTTGTGTGA
CircID chr2:219562402|219562674
ORF Type ORF6
Protein Length 72
Nucleotide Length 216
Protein Sequence MERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTVTVT
Nucleotide Sequence CTGGAGCGTGTGGTGCTGACCTGTGAGCTATGCCGGCCCTGGGCAGAGGTGCGCTGGACCAAGGATGGAGAGGAGGTGGTGGAGAGCCCCGCGCTGCTCCTGCAGAAGGAAGACACTGTCCGCCGCCTGGTGCTGCCCGCTGTCCAGCTCGAGGACTCCGGCGAGTACTTGTGTGAAATTGACGATGAGTCGGCCTCCTTCACTGTCACCGTCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab