CircRNA Information

General Information
circRNA Basic Information
CircID chr2:222657471|222657685
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGTACAGTGAGTGAGGGCTTCTTCCAAAGTCCTTCACATGAGGGGAGAAAAGCTGAGCCAGATGTAAGCCACCCTAACTATTAATCAAGCAGTTTTTCACTATACAGTATTAGCTCCCCTCCATGGGAAGGCAGTCCCTTCCCAGTGACCAACATAACAGATTGGCAACACCCCATAAATGGCAAACATCCCCAATGCAAAATACAGCTTTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:222657471|222657685 hsa-miR-33a-5p 0 0 1
chr2:222657471|222657685 hsa-miR-33a-3p 0 0 1
chr2:222657471|222657685 hsa-miR-200b-5p 0 0 1
chr2:222657471|222657685 hsa-miR-200b-3p 0 0 1
chr2:222657471|222657685 hsa-miR-149-5p 0 0 1
chr2:222657471|222657685 hsa-miR-149-3p 0 0 1
chr2:222657471|222657685 hsa-miR-320a-5p 0 0 1
chr2:222657471|222657685 hsa-miR-320a-3p 0 0 1
chr2:222657471|222657685 hsa-miR-200c-5p 0 0 1
chr2:222657471|222657685 hsa-miR-200c-3p 0 0 1
chr2:222657471|222657685 hsa-miR-429 0 0 1
chr2:222657471|222657685 hsa-miR-507 0 0 1
chr2:222657471|222657685 hsa-miR-557 1 0 1
chr2:222657471|222657685 hsa-miR-608 1 0 1
chr2:222657471|222657685 hsa-miR-609 0 0 1
chr2:222657471|222657685 hsa-miR-610 0 1 1
chr2:222657471|222657685 hsa-miR-33b-5p 0 0 1
chr2:222657471|222657685 hsa-miR-33b-3p 0 0 1
chr2:222657471|222657685 hsa-miR-633 0 0 1
chr2:222657471|222657685 hsa-miR-920 0 0 1
chr2:222657471|222657685 hsa-miR-939-5p 0 0 1
chr2:222657471|222657685 hsa-miR-939-3p 0 0 1
chr2:222657471|222657685 hsa-miR-1183 0 0 1
chr2:222657471|222657685 hsa-miR-1208 0 0 1
chr2:222657471|222657685 hsa-miR-548e-5p 0 0 1
chr2:222657471|222657685 hsa-miR-548e-3p 0 0 1
chr2:222657471|222657685 hsa-miR-1288-5p 0 0 1
chr2:222657471|222657685 hsa-miR-1288-3p 0 0 1
chr2:222657471|222657685 hsa-miR-1252-5p 0 0 1
chr2:222657471|222657685 hsa-miR-1252-3p 0 0 1
chr2:222657471|222657685 hsa-miR-342-5p 0 0 1
chr2:222657471|222657685 hsa-miR-320b 0 0 1
chr2:222657471|222657685 hsa-miR-320c 0 0 1
chr2:222657471|222657685 hsa-miR-320d 0 0 1
chr2:222657471|222657685 hsa-miR-548a-3p 0 0 1
chr2:222657471|222657685 hsa-miR-450b-5p 0 0 1
chr2:222657471|222657685 hsa-miR-7 0 0 1
chr2:222657471|222657685 hsa-miR-548f 0 0 1
chr2:222657471|222657685 hsa-miR-24 0 0 1
chr2:222657471|222657685 hsa-miR-484 1 0 0
chr2:222657471|222657685 hsa-miR-2278 1 0 0
chr2:222657471|222657685 hsa-miR-3153 1 0 0
chr2:222657471|222657685 hsa-miR-4253 1 0 0
chr2:222657471|222657685 hsa-miR-4278 1 0 0
chr2:222657471|222657685 hsa-miR-4525 1 0 0
chr2:222657471|222657685 hsa-miR-3978 1 1 0
chr2:222657471|222657685 hsa-miR-4651 1 0 0
chr2:222657471|222657685 hsa-miR-5572 1 0 0
chr2:222657471|222657685 hsa-miR-5698 1 0 0
chr2:222657471|222657685 hsa-miR-6745 1 0 0
chr2:222657471|222657685 hsa-miR-6857-5p 1 0 0
chr2:222657471|222657685 hsa-miR-192-3p 0 1 0
chr2:222657471|222657685 hsa-miR-7847-3p 1 0 0
chr2:222657471|222657685 hsa-miR-6730-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6787-3p 0 1 0
chr2:222657471|222657685 hsa-miR-6742-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6796-5p 1 0 0
chr2:222657471|222657685 hsa-miR-185-3p 0 1 0
chr2:222657471|222657685 hsa-miR-6732-5p 1 0 0
chr2:222657471|222657685 hsa-miR-204-3p 0 1 0
chr2:222657471|222657685 hsa-miR-6501-5p 1 0 0
chr2:222657471|222657685 hsa-miR-4787-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6802-5p 1 0 0
chr2:222657471|222657685 hsa-miR-450a-2-3p 0 1 0
chr2:222657471|222657685 hsa-miR-3191-3p 1 0 0
chr2:222657471|222657685 hsa-miR-4687-5p 0 1 0
chr2:222657471|222657685 hsa-miR-4423-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6812-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6737-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6752-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6756-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6803-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6819-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6842-5p 1 0 0
chr2:222657471|222657685 hsa-miR-7110-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6751-5p 1 0 0
chr2:222657471|222657685 hsa-miR-6763-5p 1 0 0
chr2:222657471|222657685 hsa-miR-3199 0 1 0
chr2:222657471|222657685 hsa-miR-6731-5p 1 0 0
chr2:222657471|222657685 hsa-miR-4700-5p 1 0 0
chr2:222657471|222657685 hsa-miR-4646-5p 0 1 0
chr2:222657471|222657685 hsa-miR-4747-5p 0 1 0
chr2:222657471|222657685 hsa-miR-5591-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:222657471|222657685
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MGRQSLPSDQHNRLATPHKWQTSPMQNTAFH
Nucleotide Sequence ATGGGAAGGCAGTCCCTTCCCAGTGACCAACATAACAGATTGGCAACACCCCATAAATGGCAAACATCCCCAATGCAAAATACAGCTTTCCAC
CircID chr2:222657471|222657685
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MHWGCLPFMGCCQSVMLVTGKGLPSHGGELILYSEKLLD
Nucleotide Sequence TTGCATTGGGGATGTTTGCCATTTATGGGGTGTTGCCAATCTGTTATGTTGGTCACTGGGAAGGGACTGCCTTCCCATGGAGGGGAGCTAATACTGTATAGTGAAAAACTGCTTGATTAA
CircID chr2:222657471|222657685
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MYFALGMFAIYGVLPICYVGHWEGTAFPWRGANTV
Nucleotide Sequence CTGTATTTTGCATTGGGGATGTTTGCCATTTATGGGGTGTTGCCAATCTGTTATGTTGGTCACTGGGAAGGGACTGCCTTCCCATGGAGGGGAGCTAATACTGTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab