CircRNA Information

General Information
circRNA Basic Information
CircID chr2:223053230|223053515
Strand -
CircType exon
Host Gene ENSG00000152049.6;
Algorism CIRI2;
Sequence GTGCACCTCACCATTCAGGAGGAGGGGGCAGACGATGAGCTGGAGGAGACCTCGGAGACGCCCCTCAACGAGAGCAGCGAAGGGTCCTCGGAGAACATCCATCAGAATTCCTAGCACCCCCGGGACCCCTGCCGGTGGCTCCATCAGCCAGCAACCTTAGAGAGAGGAAAGACAGTTTTCAAGTGTCTGGTTTCACTTTCACAGTGCGGCTGCCACTTTGAAGAGACCCTTGGTAAACCCCTGATTCGGGGTGGGGTGGGGGACTAGGCTCAGCCGGAACCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:223053230|223053515 hsa-miR-346 0 0 1
chr2:223053230|223053515 hsa-miR-511-5p 0 0 1
chr2:223053230|223053515 hsa-miR-511-3p 0 0 1
chr2:223053230|223053515 hsa-miR-520g-5p 0 0 1
chr2:223053230|223053515 hsa-miR-520g-3p 0 0 1
chr2:223053230|223053515 hsa-miR-520h 0 0 1
chr2:223053230|223053515 hsa-miR-554 0 0 1
chr2:223053230|223053515 hsa-miR-570-5p 0 0 1
chr2:223053230|223053515 hsa-miR-570-3p 0 0 1
chr2:223053230|223053515 hsa-miR-611 0 0 1
chr2:223053230|223053515 hsa-miR-629-5p 0 0 1
chr2:223053230|223053515 hsa-miR-629-3p 0 0 1
chr2:223053230|223053515 hsa-miR-639 0 0 1
chr2:223053230|223053515 hsa-miR-766-5p 0 0 1
chr2:223053230|223053515 hsa-miR-766-3p 0 0 1
chr2:223053230|223053515 hsa-miR-1180-5p 0 0 1
chr2:223053230|223053515 hsa-miR-1180-3p 0 0 1
chr2:223053230|223053515 hsa-miR-1182 0 0 1
chr2:223053230|223053515 hsa-miR-1236-5p 0 0 1
chr2:223053230|223053515 hsa-miR-1236-3p 0 0 1
chr2:223053230|223053515 hsa-miR-1238-5p 0 0 1
chr2:223053230|223053515 hsa-miR-1238-3p 0 0 1
chr2:223053230|223053515 hsa-miR-548e-5p 0 0 1
chr2:223053230|223053515 hsa-miR-548e-3p 0 0 1
chr2:223053230|223053515 hsa-miR-1294 0 0 1
chr2:223053230|223053515 hsa-miR-548g-5p 0 0 1
chr2:223053230|223053515 hsa-miR-548g-3p 0 0 1
chr2:223053230|223053515 hsa-miR-615-5p 1 0 1
chr2:223053230|223053515 hsa-miR-885-3p 0 0 1
chr2:223053230|223053515 hsa-miR-423-5p 0 0 1
chr2:223053230|223053515 hsa-miR-361-3p 0 0 1
chr2:223053230|223053515 hsa-miR-299-5p 0 0 1
chr2:223053230|223053515 hsa-miR-1207-5p 1 0 1
chr2:223053230|223053515 hsa-miR-324-3p 0 0 1
chr2:223053230|223053515 hsa-miR-342-5p 1 0 1
chr2:223053230|223053515 hsa-miR-548a-3p 0 0 1
chr2:223053230|223053515 hsa-miR-138 0 0 1
chr2:223053230|223053515 hsa-miR-548f 0 0 1
chr2:223053230|223053515 hsa-miR-608 1 0 0
chr2:223053230|223053515 hsa-miR-663a 1 0 0
chr2:223053230|223053515 hsa-miR-762 1 0 0
chr2:223053230|223053515 hsa-miR-1913 1 0 0
chr2:223053230|223053515 hsa-miR-3183 1 0 0
chr2:223053230|223053515 hsa-miR-4281 1 0 0
chr2:223053230|223053515 hsa-miR-3907 1 0 0
chr2:223053230|223053515 hsa-miR-4449 1 0 0
chr2:223053230|223053515 hsa-miR-4489 1 0 0
chr2:223053230|223053515 hsa-miR-5572 1 0 0
chr2:223053230|223053515 hsa-miR-5787 1 0 0
chr2:223053230|223053515 hsa-miR-18a-3p 1 0 0
chr2:223053230|223053515 hsa-miR-6741-5p 1 0 0
chr2:223053230|223053515 hsa-miR-23a-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6782-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6852-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6894-3p 1 0 0
chr2:223053230|223053515 hsa-miR-6830-3p 1 0 0
chr2:223053230|223053515 hsa-miR-4787-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6789-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6847-3p 1 0 0
chr2:223053230|223053515 hsa-miR-4796-3p 1 0 0
chr2:223053230|223053515 hsa-miR-4763-3p 1 0 0
chr2:223053230|223053515 hsa-miR-6752-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6803-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6813-5p 1 0 0
chr2:223053230|223053515 hsa-miR-7110-5p 1 0 0
chr2:223053230|223053515 hsa-miR-6722-3p 1 0 0
chr2:223053230|223053515 hsa-miR-6751-5p 1 0 0
chr2:223053230|223053515 hsa-miR-1909-3p 1 0 0
chr2:223053230|223053515 hsa-miR-939-5p 1 0 0
chr2:223053230|223053515 hsa-miR-1914-3p 1 0 0
chr2:223053230|223053515 hsa-miR-4646-5p 1 0 0
chr2:223053230|223053515 hsa-miR-3059-5p 1 0 0
chr2:223053230|223053515 hsa-miR-5699-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:223053230|223053515
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MVSLSQCGCHFEETLGKPLIRGGVGD
Nucleotide Sequence CTGGTTTCACTTTCACAGTGCGGCTGCCACTTTGAAGAGACCCTTGGTAAACCCCTGATTCGGGGTGGGGTGGGGGACTAG
CircID chr2:223053230|223053515
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MSWRRPRRRPSTRAAKGPRRTSIRIPSTPGTPAGGSISQQP
Nucleotide Sequence ATGAGCTGGAGGAGACCTCGGAGACGCCCCTCAACGAGAGCAGCGAAGGGTCCTCGGAGAACATCCATCAGAATTCCTAGCACCCCCGGGACCCCTGCCGGTGGCTCCATCAGCCAGCAACCTTAG
CircID chr2:223053230|223053515
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MPVAPSASNLRERKDSFQVSGFTFTVRLPL
Nucleotide Sequence CTGCCGGTGGCTCCATCAGCCAGCAACCTTAGAGAGAGGAAAGACAGTTTTCAAGTGTCTGGTTTCACTTTCACAGTGCGGCTGCCACTTTGA
CircID chr2:223053230|223053515
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MVPAEPSPPPHPESGVYQGSLQSGSRTVKVKPDT
Nucleotide Sequence CTGGTTCCGGCTGAGCCTAGTCCCCCACCCCACCCCGAATCAGGGGTTTACCAAGGGTCTCTTCAAAGTGGCAGCCGCACTGTGAAAGTGAAACCAGACACTTGA
CircID chr2:223053230|223053515
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MSFLSLRLLADGATGRGPGGARNSDGCSPRTLRCSR
Nucleotide Sequence CTGTCTTTCCTCTCTCTAAGGTTGCTGGCTGATGGAGCCACCGGCAGGGGTCCCGGGGGTGCTAGGAATTCTGATGGATGTTCTCCGAGGACCCTTCGCTGCTCTCGTTGA
CircID chr2:223053230|223053515
ORF Type ORF6
Protein Length 49
Nucleotide Length 147
Protein Sequence MMEPPAGVPGVLGILMDVLRGPFAALVEGRLRGLLQLIVCPLLLNGEVH
Nucleotide Sequence CTGATGGAGCCACCGGCAGGGGTCCCGGGGGTGCTAGGAATTCTGATGGATGTTCTCCGAGGACCCTTCGCTGCTCTCGTTGAGGGGCGTCTCCGAGGTCTCCTCCAGCTCATCGTCTGCCCCCTCCTCCTGAATGGTGAGGTGCAC
CircID chr2:223053230|223053515
ORF Type ORF7
Protein Length 27
Nucleotide Length 84
Protein Sequence MFSEDPSLLSLRGVSEVSSSSSSAPSS
Nucleotide Sequence ATGTTCTCCGAGGACCCTTCGCTGCTCTCGTTGAGGGGCGTCTCCGAGGTCTCCTCCAGCTCATCGTCTGCCCCCTCCTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab