CircRNA Information

General Information
circRNA Basic Information
CircID chr2:227491547|227524915
Strand +
CircType exon
Host Gene ENSG00000173744.17;
Algorism find_circ;CIRI2;DCC;
Sequence GCGAGGATTAAATCCACCACACAGGGTGAAATCTATCTCCATGACAACATTCACACAACAGGAAATTGAATTCTTACAAAAACATGGAAATGAAGTCTGTAAACAGATTTGGCTAGGATTATTTGATGATAGATCTTCAGCAATTCCAGACTTCAGGGATCCACAAAAAGTGAAAGAGTTTCTACAAGAAAAGTATGAAAAGAAAAGATGGTATGTCCCGCCAGAACAAGCCAAAGTCGTGGCATCAGTTCATGCATCTATTTCAGGGTCCTCTGCCAGTAGCACAAGCAGCACACCTGAGGTCAAACCACTGAAATCTCTTTTAGGGGATTCTGCACCAACACTGCACTTAAATAAGGGCACACCTAGTCAGTCCCCAGTTGTAGGTCGTTCTCAAGGGCAGCAGCAGGAGAAGAAGCAATTTGACCTTTTAAGTGATCTCGGCTCAGACATCTTTGCTGCTCCAGCTCCTCAGTCAACAGCTACAGCCAATTTTGCTAACTTTGCACATTTCAACAGTCATGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:227491547|227524915 hsa-miR-15a-5p 0 0 1
chr2:227491547|227524915 hsa-miR-15a-3p 0 0 1
chr2:227491547|227524915 hsa-miR-192-5p 0 0 1
chr2:227491547|227524915 hsa-miR-192-3p 0 0 1
chr2:227491547|227524915 hsa-miR-212-5p 0 0 1
chr2:227491547|227524915 hsa-miR-212-3p 0 0 1
chr2:227491547|227524915 hsa-miR-214-5p 0 0 1
chr2:227491547|227524915 hsa-miR-214-3p 0 0 1
chr2:227491547|227524915 hsa-miR-215-5p 0 0 1
chr2:227491547|227524915 hsa-miR-215-3p 0 0 1
chr2:227491547|227524915 hsa-miR-15b-5p 0 0 1
chr2:227491547|227524915 hsa-miR-15b-3p 0 0 1
chr2:227491547|227524915 hsa-miR-132-5p 0 0 1
chr2:227491547|227524915 hsa-miR-132-3p 0 0 1
chr2:227491547|227524915 hsa-miR-195-5p 0 0 1
chr2:227491547|227524915 hsa-miR-195-3p 0 0 1
chr2:227491547|227524915 hsa-miR-424-5p 0 0 1
chr2:227491547|227524915 hsa-miR-424-3p 0 0 1
chr2:227491547|227524915 hsa-miR-497-5p 0 0 1
chr2:227491547|227524915 hsa-miR-497-3p 0 0 1
chr2:227491547|227524915 hsa-miR-505-5p 0 0 1
chr2:227491547|227524915 hsa-miR-505-3p 0 0 1
chr2:227491547|227524915 hsa-miR-507 0 0 1
chr2:227491547|227524915 hsa-miR-557 0 0 1
chr2:227491547|227524915 hsa-miR-421 0 1 1
chr2:227491547|227524915 hsa-miR-766-5p 0 0 1
chr2:227491547|227524915 hsa-miR-766-3p 0 0 1
chr2:227491547|227524915 hsa-miR-1305 0 0 1
chr2:227491547|227524915 hsa-miR-1253 0 1 1
chr2:227491547|227524915 hsa-miR-1307-5p 0 0 1
chr2:227491547|227524915 hsa-miR-1307-3p 0 0 1
chr2:227491547|227524915 hsa-miR-513c-5p 0 0 1
chr2:227491547|227524915 hsa-miR-513c-3p 0 0 1
chr2:227491547|227524915 hsa-miR-1324 0 0 1
chr2:227491547|227524915 hsa-miR-103a-2-5p 0 1 1
chr2:227491547|227524915 hsa-miR-140-5p 0 1 1
chr2:227491547|227524915 hsa-miR-205-3p 0 1 1
chr2:227491547|227524915 hsa-miR-16 0 0 1
chr2:227491547|227524915 hsa-miR-24 0 0 1
chr2:227491547|227524915 hsa-miR-1245 0 0 1
chr2:227491547|227524915 hsa-miR-611 1 0 0
chr2:227491547|227524915 hsa-miR-765 0 1 0
chr2:227491547|227524915 hsa-miR-548v 0 1 0
chr2:227491547|227524915 hsa-miR-3185 0 1 0
chr2:227491547|227524915 hsa-miR-4281 1 0 0
chr2:227491547|227524915 hsa-miR-4688 1 1 0
chr2:227491547|227524915 hsa-miR-4721 1 0 0
chr2:227491547|227524915 hsa-miR-4751 1 0 0
chr2:227491547|227524915 hsa-miR-6165 0 1 0
chr2:227491547|227524915 hsa-miR-12119 1 0 0
chr2:227491547|227524915 hsa-miR-12127 1 0 0
chr2:227491547|227524915 hsa-miR-615-5p 1 1 0
chr2:227491547|227524915 hsa-miR-6736-3p 0 1 0
chr2:227491547|227524915 hsa-miR-3925-3p 0 1 0
chr2:227491547|227524915 hsa-miR-381-5p 0 1 0
chr2:227491547|227524915 hsa-miR-516a-5p 0 1 0
chr2:227491547|227524915 hsa-miR-431-3p 1 1 0
chr2:227491547|227524915 hsa-miR-6879-5p 0 1 0
chr2:227491547|227524915 hsa-miR-4632-5p 1 1 0
chr2:227491547|227524915 hsa-miR-6735-5p 0 1 0
chr2:227491547|227524915 hsa-miR-4436b-3p 0 1 0
chr2:227491547|227524915 hsa-miR-7843-5p 0 1 0
chr2:227491547|227524915 hsa-miR-6838-5p 0 1 0
chr2:227491547|227524915 hsa-miR-6843-3p 1 0 0
chr2:227491547|227524915 hsa-miR-514b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:227491547|227524915
ORF Type ORF1
Protein Length 162
Nucleotide Length 486
Protein Sequence MTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPTLHLNKGTPSQSPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHA
Nucleotide Sequence ATGACAACATTCACACAACAGGAAATTGAATTCTTACAAAAACATGGAAATGAAGTCTGTAAACAGATTTGGCTAGGATTATTTGATGATAGATCTTCAGCAATTCCAGACTTCAGGGATCCACAAAAAGTGAAAGAGTTTCTACAAGAAAAGTATGAAAAGAAAAGATGGTATGTCCCGCCAGAACAAGCCAAAGTCGTGGCATCAGTTCATGCATCTATTTCAGGGTCCTCTGCCAGTAGCACAAGCAGCACACCTGAGGTCAAACCACTGAAATCTCTTTTAGGGGATTCTGCACCAACACTGCACTTAAATAAGGGCACACCTAGTCAGTCCCCAGTTGTAGGTCGTTCTCAAGGGCAGCAGCAGGAGAAGAAGCAATTTGACCTTTTAAGTGATCTCGGCTCAGACATCTTTGCTGCTCCAGCTCCTCAGTCAACAGCTACAGCCAATTTTGCTAACTTTGCACATTTCAACAGTCATGCA
CircID chr2:227491547|227524915
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MKRKDGMSRQNKPKSWHQFMHLFQGPLPVAQAAHLRSNH*
Nucleotide Sequence ATGAAAAGAAAAGATGGTATGTCCCGCCAGAACAAGCCAAAGTCGTGGCATCAGTTCATGCATCTATTTCAGGGTCCTCTGCCAGTAGCACAAGCAGCACACCTGAGGTCAAACCACTGA
CircID chr2:227491547|227524915
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MHELMPRLWLVLAGHTIFSFHTFLVETLSLFVDP*
Nucleotide Sequence ATGCATGAACTGATGCCACGACTTTGGCTTGTTCTGGCGGGACATACCATCTTTTCTTTTCATACTTTTCTTGTAGAAACTCTTTCACTTTTTGTGGATCCCTGA
CircID chr2:227491547|227524915
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence LACSGGTYHLFFSYFSCRNSFTFCGSLKSGIAEDLSSNNPSQICLQTSFPCFCKNSISCCVNVVMEIDFTLCGGFNPR
Nucleotide Sequence TTGGCTTGTTCTGGCGGGACATACCATCTTTTCTTTTCATACTTTTCTTGTAGAAACTCTTTCACTTTTTGTGGATCCCTGAAGTCTGGAATTGCTGAAGATCTATCATCAAATAATCCTAGCCAAATCTGTTTACAGACTTCATTTCCATGTTTTTGTAAGAATTCAATTTCCTGTTGTGTGAATGTTGTCATGGAGATAGATTTCACCCTGTGTGGTGGATTTAATCCTCGC
CircID chr2:227491547|227524915
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MLTEELEQQRCLSRDHLKGQIASSPAAALENDLQLGTS
Nucleotide Sequence CTGTTGACTGAGGAGCTGGAGCAGCAAAGATGTCTGAGCCGAGATCACTTAAAAGGTCAAATTGCTTCTTCTCCTGCTGCTGCCCTTGAGAACGACCTACAACTGGGGACCTCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:227491547|227524915 RBM5 0 1 0
chr2:227491547|227524915 U2AF2 2 29 7
chr2:227491547|227524915 ELAVL1 2 6 1
chr2:227491547|227524915 SF3B4 0 1 0
chr2:227491547|227524915 METTL3 0 1 0
chr2:227491547|227524915 CELF2 0 1 0
chr2:227491547|227524915 PRPF8 0 3 0
chr2:227491547|227524915 UPF1 1 4 0
chr2:227491547|227524915 TAF15 1 0 0
chr2:227491547|227524915 FMR1 0 0 2
chr2:227491547|227524915 CPSF6 0 0 1
chr2:227491547|227524915 FUS 0 1 0
chr2:227491547|227524915 SRSF7 1 0 2
chr2:227491547|227524915 SRSF1 0 1 0
chr2:227491547|227524915 NOP58 1 1 8
chr2:227491547|227524915 U2AF1 0 0 3
chr2:227491547|227524915 TNRC6A 0 2 0
chr2:227491547|227524915 NOP56 3 2 1
chr2:227491547|227524915 DDX54 0 0 11
chr2:227491547|227524915 LSM11 0 2 0
chr2:227491547|227524915 RBM10 1 9 0
chr2:227491547|227524915 HNRNPL 0 4 0
chr2:227491547|227524915 SF3A3 0 0 1
chr2:227491547|227524915 PTBP1 0 0 4
chr2:227491547|227524915 HNRNPC 0 3 0
chr2:227491547|227524915 TRA2A 0 0 1
chr2:227491547|227524915 HNRNPA1 0 2 0
chr2:227491547|227524915 ACIN1 0 0 5
chr2:227491547|227524915 LIN28B 0 0 6
chr2:227491547|227524915 FXR2 1 0 0
chr2:227491547|227524915 SND1 0 0 1
chr2:227491547|227524915 IGF2BP1 0 1 12
chr2:227491547|227524915 IGF2BP3 0 0 5
chr2:227491547|227524915 IGF2BP2 0 9 18
chr2:227491547|227524915 FTO 0 1 0
chr2:227491547|227524915 BUD13 0 0 2
chr2:227491547|227524915 KHSRP 0 2 0
chr2:227491547|227524915 RBM47 0 4 2
chr2:227491547|227524915 DDX42 0 1 0
chr2:227491547|227524915 CSTF2T 0 0 3
chr2:227491547|227524915 TIA1 0 2 0
chr2:227491547|227524915 RBM22 0 1 0
chr2:227491547|227524915 TIAL1 0 4 0
chr2:227491547|227524915 FBL 1 1 4
chr2:227491547|227524915 AGO1 0 0 2
chr2:227491547|227524915 EIF4A3 0 0 8
chr2:227491547|227524915 AGO2 0 2 21
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab