CircRNA Information

General Information
circRNA Basic Information
CircID chr2:229778547|229778935
Strand +
CircType exon
Host Gene ENSG00000153827.12;
Algorism CIRI2;
Sequence TACAGAGAGCTGACTTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAGGGAGCCAAGAAGGGACCAAGTATATTCAAAACCTCCAGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:229778547|229778935 hsa-miR-107 0 0 1
chr2:229778547|229778935 hsa-miR-204-5p 0 0 1
chr2:229778547|229778935 hsa-miR-204-3p 0 0 1
chr2:229778547|229778935 hsa-miR-211-5p 0 0 1
chr2:229778547|229778935 hsa-miR-211-3p 0 0 1
chr2:229778547|229778935 hsa-miR-122-5p 0 0 1
chr2:229778547|229778935 hsa-miR-122-3p 0 0 1
chr2:229778547|229778935 hsa-miR-133b 0 0 1
chr2:229778547|229778935 hsa-miR-412-5p 0 0 1
chr2:229778547|229778935 hsa-miR-412-3p 0 0 1
chr2:229778547|229778935 hsa-miR-539-5p 0 0 1
chr2:229778547|229778935 hsa-miR-539-3p 0 0 1
chr2:229778547|229778935 hsa-miR-545-5p 0 0 1
chr2:229778547|229778935 hsa-miR-545-3p 0 0 1
chr2:229778547|229778935 hsa-miR-570-5p 0 0 1
chr2:229778547|229778935 hsa-miR-570-3p 0 0 1
chr2:229778547|229778935 hsa-miR-600 0 1 1
chr2:229778547|229778935 hsa-miR-802 0 0 1
chr2:229778547|229778935 hsa-miR-890 0 0 1
chr2:229778547|229778935 hsa-miR-1179 0 1 1
chr2:229778547|229778935 hsa-miR-1248 0 0 1
chr2:229778547|229778935 hsa-miR-548g-5p 0 0 1
chr2:229778547|229778935 hsa-miR-548g-3p 0 0 1
chr2:229778547|229778935 hsa-miR-513c-5p 0 0 1
chr2:229778547|229778935 hsa-miR-513c-3p 0 0 1
chr2:229778547|229778935 hsa-miR-490-3p 0 0 1
chr2:229778547|229778935 hsa-miR-654-3p 0 0 1
chr2:229778547|229778935 hsa-miR-885-5p 0 0 1
chr2:229778547|229778935 hsa-miR-125a-5p 0 0 1
chr2:229778547|229778935 hsa-miR-515-5p 0 0 1
chr2:229778547|229778935 hsa-miR-548b-3p 0 0 1
chr2:229778547|229778935 hsa-miR-371-5p 0 0 1
chr2:229778547|229778935 hsa-miR-125b 0 0 1
chr2:229778547|229778935 hsa-miR-103 0 0 1
chr2:229778547|229778935 hsa-miR-133a 0 0 1
chr2:229778547|229778935 hsa-miR-612 1 1 0
chr2:229778547|229778935 hsa-miR-637 1 0 0
chr2:229778547|229778935 hsa-miR-665 1 0 0
chr2:229778547|229778935 hsa-miR-3161 1 0 0
chr2:229778547|229778935 hsa-miR-4308 1 0 0
chr2:229778547|229778935 hsa-miR-3908 0 1 0
chr2:229778547|229778935 hsa-miR-3909 0 1 0
chr2:229778547|229778935 hsa-miR-3921 0 1 0
chr2:229778547|229778935 hsa-miR-4489 1 0 0
chr2:229778547|229778935 hsa-miR-4490 0 1 0
chr2:229778547|229778935 hsa-miR-4496 0 1 0
chr2:229778547|229778935 hsa-miR-4719 0 1 0
chr2:229778547|229778935 hsa-miR-5093 1 0 0
chr2:229778547|229778935 hsa-miR-5572 1 1 0
chr2:229778547|229778935 hsa-miR-504-3p 1 1 0
chr2:229778547|229778935 hsa-miR-432-5p 1 1 0
chr2:229778547|229778935 hsa-miR-6749-5p 1 0 0
chr2:229778547|229778935 hsa-miR-6866-5p 0 1 0
chr2:229778547|229778935 hsa-miR-7106-3p 0 1 0
chr2:229778547|229778935 hsa-miR-4778-3p 0 1 0
chr2:229778547|229778935 hsa-miR-4773 0 1 0
chr2:229778547|229778935 hsa-miR-1288-5p 0 1 0
chr2:229778547|229778935 hsa-miR-519d-5p 0 1 0
chr2:229778547|229778935 hsa-miR-1245b-3p 0 1 0
chr2:229778547|229778935 hsa-miR-518c-5p 1 0 0
chr2:229778547|229778935 hsa-miR-6800-3p 0 1 0
chr2:229778547|229778935 hsa-miR-133a-3p 0 1 0
chr2:229778547|229778935 hsa-miR-517-5p 0 1 0
chr2:229778547|229778935 hsa-miR-4650-5p 0 1 0
chr2:229778547|229778935 hsa-miR-6803-5p 1 0 0
chr2:229778547|229778935 hsa-miR-6851-5p 1 0 0
chr2:229778547|229778935 hsa-miR-3198 0 1 0
chr2:229778547|229778935 hsa-miR-10400-3p 1 0 0
chr2:229778547|229778935 hsa-miR-6884-5p 1 0 0
chr2:229778547|229778935 hsa-miR-10394-5p 1 0 0
chr2:229778547|229778935 hsa-miR-6505-3p 0 1 0
chr2:229778547|229778935 hsa-miR-373-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:229778547|229778935
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MGLWRGEEVTLSNPKGSQEGTKYIQNLQG
Nucleotide Sequence TTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAGGGAGCCAAGAAGGGACCAAGTATATTCAAAACCTCCAGGGC
CircID chr2:229778547|229778935
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MEVLNILGPFLAPFWIAKSYFFTSPKTQVSSL
Nucleotide Sequence CTGGAGGTTTTGAATATACTTGGTCCCTTCTTGGCTCCCTTTTGGATTGCTAAGAGTTACTTCTTCACCTCTCCAAAGACCCAAGTCAGCTCTCTG
CircID chr2:229778547|229778935
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MVPSWLPFGLLRVTSSPLQRPKSALC
Nucleotide Sequence TTGGTCCCTTCTTGGCTCCCTTTTGGATTGCTAAGAGTTACTTCTTCACCTCTCCAAAGACCCAAGTCAGCTCTCTGT
CircID chr2:229778547|229778935
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPICKLVGLCYSDQVMDSDSLLDIFNF
Nucleotide Sequence ATGCCTATCTGTAAGTTAGTTGGTTTGTGTTACTCAGATCAGGTAATGGACTCTGACAGTTTATTAGACATATTTAATTTCTAA
CircID chr2:229778547|229778935
ORF Type ORF2
Protein Length 70
Nucleotide Length 210
Protein Sequence MFSHLSNREGLSSSRGLHSVICTPILRMLNFLNVLSYQVLFCFWKHHLKFAALLVFQGAKKGPSIFKTSR
Nucleotide Sequence CTGTTTTCTCATTTATCAAATAGGGAAGGCCTGTCCAGTTCTAGAGGACTTCATTCAGTGATCTGCACTCCAATTTTGAGAATGCTTAATTTCTTAAATGTTCTTAGTTACCAGGTTTTGTTTTGTTTTTGGAAACATCATCTGAAGTTTGCTGCATTGCTTGTTTTTCAGGGAGCCAAGAAGGGACCAAGTATATTCAAAACCTCCAGG
CircID chr2:229778547|229778935
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MYLLSFSLCFLIYQIGKACPVLEDFIQ
Nucleotide Sequence CTGTACTTGCTTTCTTTTAGCCTCTGTTTTCTCATTTATCAAATAGGGAAGGCCTGTCCAGTTCTAGAGGACTTCATTCAGTGA
CircID chr2:229778547|229778935
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MFLETSSEVCCIACFSGSQEGTKYIQNLQG
Nucleotide Sequence TTGTTTTTGGAAACATCATCTGAAGTTTGCTGCATTGCTTGTTTTTCAGGGAGCCAAGAAGGGACCAAGTATATTCAAAACCTCCAGGGC
CircID chr2:229778547|229778935
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MVPSWLPEKQAMQQTSDDVSKNKTKPGN
Nucleotide Sequence TTGGTCCCTTCTTGGCTCCCTGAAAAACAAGCAATGCAGCAAACTTCAGATGATGTTTCCAAAAACAAAACAAAACCTGGTAACTAA
CircID chr2:229778547|229778935
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MKNKQCSKLQMMFPKTKQNLVTKNI
Nucleotide Sequence CTGAAAAACAAGCAATGCAGCAAACTTCAGATGATGTTTCCAAAAACAAAACAAAACCTGGTAACTAAGAACATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab