CircRNA Information

General Information
circRNA Basic Information
CircID chr2:232336467|232336653
Strand -
CircType exon
Host Gene ENSG00000144535.18;
Algorism CIRI2;
Sequence AGGTCATCACCATCTTCAGCCTGGTGGAGGTGGTCCTGCAGGCAGAGTCCACAGCCCTCAAGTACAGCGCCATCCTGAAGCGGCCAGGCACCCAGGGCCACCTGGGCCCTGAGAAGGAGGAGGAGGAGTCTGACGGTGAGCCCGAGGACTCAAGCACCAGCTGAGCTCCACCAGCCGCCTGCCCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:232336467|232336653 hsa-miR-328-5p 0 0 1
chr2:232336467|232336653 hsa-miR-328-3p 0 0 1
chr2:232336467|232336653 hsa-miR-627-5p 0 0 1
chr2:232336467|232336653 hsa-miR-627-3p 0 0 1
chr2:232336467|232336653 hsa-miR-636 0 1 1
chr2:232336467|232336653 hsa-miR-652-5p 0 0 1
chr2:232336467|232336653 hsa-miR-652-3p 0 0 1
chr2:232336467|232336653 hsa-miR-661 0 1 1
chr2:232336467|232336653 hsa-miR-744-5p 0 0 1
chr2:232336467|232336653 hsa-miR-744-3p 0 0 1
chr2:232336467|232336653 hsa-miR-1237-5p 0 0 1
chr2:232336467|232336653 hsa-miR-1237-3p 0 0 1
chr2:232336467|232336653 hsa-miR-663b 0 1 1
chr2:232336467|232336653 hsa-miR-1205 0 1 1
chr2:232336467|232336653 hsa-miR-1286 0 1 1
chr2:232336467|232336653 hsa-miR-1291 0 0 1
chr2:232336467|232336653 hsa-miR-1248 0 0 1
chr2:232336467|232336653 hsa-miR-1266-5p 0 0 1
chr2:232336467|232336653 hsa-miR-1266-3p 0 0 1
chr2:232336467|232336653 hsa-miR-486-3p 0 0 1
chr2:232336467|232336653 hsa-miR-1207-3p 0 0 1
chr2:232336467|232336653 hsa-miR-550 0 0 1
chr2:232336467|232336653 hsa-miR-138 0 0 1
chr2:232336467|232336653 hsa-miR-1254 0 0 1
chr2:232336467|232336653 hsa-miR-346 0 1 0
chr2:232336467|232336653 hsa-miR-637 1 0 0
chr2:232336467|232336653 hsa-miR-638 1 0 0
chr2:232336467|232336653 hsa-miR-3139 0 1 0
chr2:232336467|232336653 hsa-miR-4268 0 1 0
chr2:232336467|232336653 hsa-miR-3918 0 1 0
chr2:232336467|232336653 hsa-miR-3929 0 1 0
chr2:232336467|232336653 hsa-miR-3937 0 1 0
chr2:232336467|232336653 hsa-miR-4498 1 0 0
chr2:232336467|232336653 hsa-miR-4522 1 1 0
chr2:232336467|232336653 hsa-miR-4647 0 1 0
chr2:232336467|232336653 hsa-miR-4656 1 0 0
chr2:232336467|232336653 hsa-miR-4675 1 1 0
chr2:232336467|232336653 hsa-miR-4721 1 0 0
chr2:232336467|232336653 hsa-miR-5090 1 1 0
chr2:232336467|232336653 hsa-miR-5193 0 1 0
chr2:232336467|232336653 hsa-miR-6075 0 1 0
chr2:232336467|232336653 hsa-miR-7704 1 0 0
chr2:232336467|232336653 hsa-miR-7974 1 1 0
chr2:232336467|232336653 hsa-miR-8081 0 1 0
chr2:232336467|232336653 hsa-miR-138-5p 0 1 0
chr2:232336467|232336653 hsa-miR-4726-3p 1 1 0
chr2:232336467|232336653 hsa-miR-6881-3p 0 1 0
chr2:232336467|232336653 hsa-miR-6854-5p 0 1 0
chr2:232336467|232336653 hsa-miR-6727-5p 0 1 0
chr2:232336467|232336653 hsa-miR-6721-5p 0 1 0
chr2:232336467|232336653 hsa-miR-27b-5p 0 1 0
chr2:232336467|232336653 hsa-miR-6787-3p 0 1 0
chr2:232336467|232336653 hsa-miR-1226-5p 1 1 0
chr2:232336467|232336653 hsa-miR-3944-3p 1 1 0
chr2:232336467|232336653 hsa-miR-1229-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6894-3p 0 1 0
chr2:232336467|232336653 hsa-miR-4640-5p 1 0 0
chr2:232336467|232336653 hsa-miR-5001-3p 0 1 0
chr2:232336467|232336653 hsa-miR-3127-5p 0 1 0
chr2:232336467|232336653 hsa-miR-1228-5p 1 0 0
chr2:232336467|232336653 hsa-miR-4733-3p 0 1 0
chr2:232336467|232336653 hsa-miR-7160-3p 0 1 0
chr2:232336467|232336653 hsa-miR-4742-3p 1 0 0
chr2:232336467|232336653 hsa-miR-3158-3p 1 0 0
chr2:232336467|232336653 hsa-miR-6738-3p 0 1 0
chr2:232336467|232336653 hsa-miR-506-5p 1 1 0
chr2:232336467|232336653 hsa-miR-1207-5p 1 0 0
chr2:232336467|232336653 hsa-miR-4763-3p 1 0 0
chr2:232336467|232336653 hsa-miR-6775-5p 1 1 0
chr2:232336467|232336653 hsa-miR-5001-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6726-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6743-5p 1 1 0
chr2:232336467|232336653 hsa-miR-6752-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6756-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6815-5p 0 1 0
chr2:232336467|232336653 hsa-miR-6851-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6836-5p 0 1 0
chr2:232336467|232336653 hsa-miR-10392-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6848-5p 1 0 0
chr2:232336467|232336653 hsa-miR-1271-3p 0 1 0
chr2:232336467|232336653 hsa-miR-6791-5p 0 1 0
chr2:232336467|232336653 hsa-miR-4756-5p 1 0 0
chr2:232336467|232336653 hsa-miR-6884-5p 0 1 0
chr2:232336467|232336653 hsa-miR-6505-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:232336467|232336653
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MRRRRRSLTVSPRTQAPAELHQPPAP
Nucleotide Sequence CTGAGAAGGAGGAGGAGGAGTCTGACGGTGAGCCCGAGGACTCAAGCACCAGCTGAGCTCCACCAGCCGCCTGCCCCG
CircID chr2:232336467|232336653
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MVEVVLQAESTALKYSAILKRPGTQGHLGPEKEEEESDGEPEDSSTS
Nucleotide Sequence CTGGTGGAGGTGGTCCTGCAGGCAGAGTCCACAGCCCTCAAGTACAGCGCCATCCTGAAGCGGCCAGGCACCCAGGGCCACCTGGGCCCTGAGAAGGAGGAGGAGGAGTCTGACGGTGAGCCCGAGGACTCAAGCACCAGCTGA
CircID chr2:232336467|232336653
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MVLESSGSPSDSSSSFSGPRWPWVPGRFRMALYLRAVDSACRTTSTRLKMVMT
Nucleotide Sequence CTGGTGCTTGAGTCCTCGGGCTCACCGTCAGACTCCTCCTCCTCCTTCTCAGGGCCCAGGTGGCCCTGGGTGCCTGGCCGCTTCAGGATGGCGCTGTACTTGAGGGCTGTGGACTCTGCCTGCAGGACCACCTCCACCAGGCTGAAGATGGTGATGACC
CircID chr2:232336467|232336653
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MVELSWCLSPRAHRQTPPPPSQGPGGPGCLAASGWRCT
Nucleotide Sequence CTGGTGGAGCTCAGCTGGTGCTTGAGTCCTCGGGCTCACCGTCAGACTCCTCCTCCTCCTTCTCAGGGCCCAGGTGGCCCTGGGTGCCTGGCCGCTTCAGGATGGCGCTGTACTTGA
CircID chr2:232336467|232336653
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MGAWPLQDGAVLEGCGLCLQDHLHQAEDGDD
Nucleotide Sequence CTGGGTGCCTGGCCGCTTCAGGATGGCGCTGTACTTGAGGGCTGTGGACTCTGCCTGCAGGACCACCTCCACCAGGCTGAAGATGGTGATGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab