CircRNA Information

General Information
circRNA Basic Information
CircID chr2:233167147|233167300
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCAGATTTAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGCCCACAGGCATGCACTACTATGCCATTTTTTTTTTTTTTTTTTTTGTAGAAATGGTACCTTCCTATGTTGCCCAGGCTGGTCTCAAACTCCCGGTCTCAGGAGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:233167147|233167300 hsa-miR-130a-5p 0 0 1
chr2:233167147|233167300 hsa-miR-130a-3p 0 0 1
chr2:233167147|233167300 hsa-miR-301a-5p 0 0 1
chr2:233167147|233167300 hsa-miR-301a-3p 0 0 1
chr2:233167147|233167300 hsa-miR-130b-5p 0 0 1
chr2:233167147|233167300 hsa-miR-130b-3p 0 0 1
chr2:233167147|233167300 hsa-miR-510-5p 0 0 1
chr2:233167147|233167300 hsa-miR-510-3p 0 0 1
chr2:233167147|233167300 hsa-miR-612 0 0 1
chr2:233167147|233167300 hsa-miR-661 0 0 1
chr2:233167147|233167300 hsa-miR-454-5p 0 0 1
chr2:233167147|233167300 hsa-miR-454-3p 0 0 1
chr2:233167147|233167300 hsa-miR-301b-5p 0 0 1
chr2:233167147|233167300 hsa-miR-301b-3p 0 0 1
chr2:233167147|233167300 hsa-miR-1200 0 1 1
chr2:233167147|233167300 hsa-miR-512-5p 0 0 1
chr2:233167147|233167300 hsa-miR-769-5p 0 0 1
chr2:233167147|233167300 hsa-miR-296-5p 0 0 1
chr2:233167147|233167300 hsa-miR-1283 0 0 1
chr2:233167147|233167300 hsa-miR-485-5p 0 0 1
chr2:233167147|233167300 hsa-miR-1244 0 0 1
chr2:233167147|233167300 hsa-miR-1285 0 0 1
chr2:233167147|233167300 hsa-miR-665 1 1 0
chr2:233167147|233167300 hsa-miR-3147 1 0 0
chr2:233167147|233167300 hsa-miR-4296 0 1 0
chr2:233167147|233167300 hsa-miR-4322 0 1 0
chr2:233167147|233167300 hsa-miR-4324 0 1 0
chr2:233167147|233167300 hsa-miR-4265 0 1 0
chr2:233167147|233167300 hsa-miR-4329 0 1 0
chr2:233167147|233167300 hsa-miR-3683 0 1 0
chr2:233167147|233167300 hsa-miR-3929 0 1 0
chr2:233167147|233167300 hsa-miR-3937 1 0 0
chr2:233167147|233167300 hsa-miR-4478 0 1 0
chr2:233167147|233167300 hsa-miR-4505 1 0 0
chr2:233167147|233167300 hsa-miR-4656 1 0 0
chr2:233167147|233167300 hsa-miR-5787 1 0 0
chr2:233167147|233167300 hsa-miR-6074 1 0 0
chr2:233167147|233167300 hsa-miR-6134 0 1 0
chr2:233167147|233167300 hsa-miR-134-3p 0 1 0
chr2:233167147|233167300 hsa-miR-4433a-3p 1 0 0
chr2:233167147|233167300 hsa-miR-7106-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6894-5p 0 1 0
chr2:233167147|233167300 hsa-miR-4786-5p 0 1 0
chr2:233167147|233167300 hsa-miR-6089 1 1 0
chr2:233167147|233167300 hsa-miR-4695-5p 0 1 0
chr2:233167147|233167300 hsa-miR-6746-5p 1 0 0
chr2:233167147|233167300 hsa-miR-7160-5p 0 1 0
chr2:233167147|233167300 hsa-miR-6849-3p 0 1 0
chr2:233167147|233167300 hsa-miR-6771-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6749-5p 1 0 0
chr2:233167147|233167300 hsa-miR-146b-3p 0 1 0
chr2:233167147|233167300 hsa-miR-7162-3p 0 1 0
chr2:233167147|233167300 hsa-miR-4671-3p 0 1 0
chr2:233167147|233167300 hsa-miR-6778-5p 0 1 0
chr2:233167147|233167300 hsa-miR-6752-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6756-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6813-5p 1 0 0
chr2:233167147|233167300 hsa-miR-7107-5p 1 1 0
chr2:233167147|233167300 hsa-miR-6774-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6779-5p 1 1 0
chr2:233167147|233167300 hsa-miR-6808-5p 1 0 0
chr2:233167147|233167300 hsa-miR-5189-5p 0 1 0
chr2:233167147|233167300 hsa-miR-4632-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6846-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6848-5p 1 1 0
chr2:233167147|233167300 hsa-miR-3187-5p 1 1 0
chr2:233167147|233167300 hsa-miR-6831-5p 1 0 0
chr2:233167147|233167300 hsa-miR-1285-3p 1 1 0
chr2:233167147|233167300 hsa-miR-6773-5p 0 1 0
chr2:233167147|233167300 hsa-miR-3116 1 0 0
chr2:233167147|233167300 hsa-miR-6724-5p 1 0 0
chr2:233167147|233167300 hsa-miR-6884-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:233167147|233167300
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MHYYAIFFFFFFVEMVPSYVAQAGLKLPVSGG
Nucleotide Sequence ATGCACTACTATGCCATTTTTTTTTTTTTTTTTTTTGTAGAAATGGTACCTTCCTATGTTGCCCAGGCTGGTCTCAAACTCCCGGTCTCAGGAGGT
CircID chr2:233167147|233167300
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MSSWAHRHALLCHFFFFFFCRNGTFLCCPGWSQTPGLRR
Nucleotide Sequence CTGAGTAGCTGGGCCCACAGGCATGCACTACTATGCCATTTTTTTTTTTTTTTTTTTTGTAGAAATGGTACCTTCCTATGTTGCCCAGGCTGGTCTCAAACTCCCGGTCTCAGGAGG
CircID chr2:233167147|233167300
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MGNIGRYHFYKKKKKKNGIVVHACGPSYSGG
Nucleotide Sequence CTGGGCAACATAGGAAGGTACCATTTCTACAAAAAAAAAAAAAAAAAAAATGGCATAGTAGTGCATGCCTGTGGGCCCAGCTACTCAGGAGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab