CircRNA Information

General Information
circRNA Basic Information
CircID chr2:237366961|237367190
Strand -
CircType exon
Host Gene ENSG00000163359.14;
Algorism CIRI2;
Sequence CCGCTGGTCCAGGCGGCTGCCTGCCTCAGGCACAAAGTGGTTTACCCGCAGGTGCTCAAGGCCCACCTTAGTGTTGGCGTGTCTTCCCCCTTTGTAGACCACTTTGTTGATGGCGTCAATAATCTGCCTCTTGGTAGAGAAGTCCTTCAGGAAGAATTCGTCAGTGGGGTCAGAGTTGTACTGGACAAGCCCCACTTGGATGGAGTCGCCATCTTCATAAACTGTGTCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:237366961|237367190 hsa-miR-18a-5p 0 0 1
chr2:237366961|237367190 hsa-miR-18a-3p 0 0 1
chr2:237366961|237367190 hsa-miR-198 0 0 1
chr2:237366961|237367190 hsa-miR-18b-5p 0 0 1
chr2:237366961|237367190 hsa-miR-18b-3p 0 0 1
chr2:237366961|237367190 hsa-miR-520g-5p 0 0 1
chr2:237366961|237367190 hsa-miR-520g-3p 0 0 1
chr2:237366961|237367190 hsa-miR-520h 0 0 1
chr2:237366961|237367190 hsa-miR-601 0 0 1
chr2:237366961|237367190 hsa-miR-625-5p 0 0 1
chr2:237366961|237367190 hsa-miR-625-3p 0 0 1
chr2:237366961|237367190 hsa-miR-541-5p 0 0 1
chr2:237366961|237367190 hsa-miR-541-3p 0 0 1
chr2:237366961|237367190 hsa-miR-940 0 0 1
chr2:237366961|237367190 hsa-miR-942-5p 0 0 1
chr2:237366961|237367190 hsa-miR-942-3p 0 0 1
chr2:237366961|237367190 hsa-miR-1200 0 0 1
chr2:237366961|237367190 hsa-miR-1252-5p 0 0 1
chr2:237366961|237367190 hsa-miR-1252-3p 0 0 1
chr2:237366961|237367190 hsa-miR-1827 0 0 1
chr2:237366961|237367190 hsa-miR-770-5p 0 0 1
chr2:237366961|237367190 hsa-miR-1283 0 0 1
chr2:237366961|237367190 hsa-miR-654-5p 0 0 1
chr2:237366961|237367190 hsa-miR-524-5p 0 0 1
chr2:237366961|237367190 hsa-miR-520d-5p 0 0 1
chr2:237366961|237367190 hsa-miR-550 0 0 1
chr2:237366961|237367190 hsa-miR-7 0 0 1
chr2:237366961|237367190 hsa-miR-1254 0 0 1
chr2:237366961|237367190 hsa-miR-1273 0 0 1
chr2:237366961|237367190 hsa-miR-1201 0 0 1
chr2:237366961|237367190 hsa-miR-886-3p 0 0 1
chr2:237366961|237367190 hsa-miR-4271 1 0 0
chr2:237366961|237367190 hsa-miR-4462 1 0 0
chr2:237366961|237367190 hsa-miR-4673 1 0 0
chr2:237366961|237367190 hsa-miR-4739 1 0 0
chr2:237366961|237367190 hsa-miR-6732-5p 1 0 0
chr2:237366961|237367190 hsa-miR-6798-5p 1 0 0
chr2:237366961|237367190 hsa-miR-7109-5p 1 0 0
chr2:237366961|237367190 hsa-miR-4763-3p 1 0 0
chr2:237366961|237367190 hsa-miR-7111-5p 1 0 0
chr2:237366961|237367190 hsa-miR-642b-3p 1 0 0
chr2:237366961|237367190 hsa-miR-10526-3p 1 0 0
chr2:237366961|237367190 hsa-miR-1237-5p 1 0 0
chr2:237366961|237367190 hsa-miR-4725-3p 1 0 0
chr2:237366961|237367190 hsa-miR-6791-5p 1 0 0
chr2:237366961|237367190 hsa-miR-550a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:237366961|237367190
ORF Type ORF1
Protein Length 75
Nucleotide Length 225
Protein Sequence MVQAAACLRHKVVYPQVLKAHLSVGVSSPFVDHFVDGVNNLPLGREVLQEEFVSGVRVVLDKPHLDGVAIFINCV
Nucleotide Sequence CTGGTCCAGGCGGCTGCCTGCCTCAGGCACAAAGTGGTTTACCCGCAGGTGCTCAAGGCCCACCTTAGTGTTGGCGTGTCTTCCCCCTTTGTAGACCACTTTGTTGATGGCGTCAATAATCTGCCTCTTGGTAGAGAAGTCCTTCAGGAAGAATTCGTCAGTGGGGTCAGAGTTGTACTGGACAAGCCCCACTTGGATGGAGTCGCCATCTTCATAAACTGTGTC
CircID chr2:237366961|237367190
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MPASGTKWFTRRCSRPTLVLACLPPL
Nucleotide Sequence CTGCCTGCCTCAGGCACAAAGTGGTTTACCCGCAGGTGCTCAAGGCCCACCTTAGTGTTGGCGTGTCTTCCCCCTTTGTAG
CircID chr2:237366961|237367190
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MLMASIICLLVEKSFRKNSSVGSELYWTSPTWMESPSS
Nucleotide Sequence TTGTTGATGGCGTCAATAATCTGCCTCTTGGTAGAGAAGTCCTTCAGGAAGAATTCGTCAGTGGGGTCAGAGTTGTACTGGACAAGCCCCACTTGGATGGAGTCGCCATCTTCATAA
CircID chr2:237366961|237367190
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MTPSTKWSTKGEDTPTLRWALSTCG
Nucleotide Sequence TTGACGCCATCAACAAAGTGGTCTACAAAGGGGGAAGACACGCCAACACTAAGGTGGGCCTTGAGCACCTGCGGGTAA
CircID chr2:237366961|237367190
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQR
Nucleotide Sequence CTGAAGGACTTCTCTACCAAGAGGCAGATTATTGACGCCATCAACAAAGTGGTCTACAAAGGGGGAAGACACGCCAACACTAAGGTGGGCCTTGAGCACCTGCGGGTAAACCACTTTGTGCCTGAGGCAGGCAGCCGCCTGGACCAGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab