CircRNA Information

General Information
circRNA Basic Information
CircID chr2:237513860|237514147
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGACCTTGCTAGGTTCCCCACTCAGCCTATTAGCAGCAGGTCCGGCCTTGTTATATAATCTTCTTTCCACACGCAGTCCACCCTTTCTTGAACCTAAGCATAAAAATGGACAATTTCCCTGCATCTGTGGGTCTGTATTCTGAAGGCTCCCATGTATACACGGTAAACACATTTCTAAATCTTTTGTCCAATGAATCTGCCTTTTACGAGATGATTTTTCAGTGAACTTTCAGAAGGTCAAGGCTTTTGGCTCCGAACGTGCCCAGATGACAGAGCCAGAGAGCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:237513860|237514147 hsa-miR-192-5p 0 0 1
chr2:237513860|237514147 hsa-miR-192-3p 0 0 1
chr2:237513860|237514147 hsa-miR-215-5p 0 0 1
chr2:237513860|237514147 hsa-miR-215-3p 0 0 1
chr2:237513860|237514147 hsa-miR-149-5p 0 0 1
chr2:237513860|237514147 hsa-miR-149-3p 0 0 1
chr2:237513860|237514147 hsa-miR-370-5p 0 0 1
chr2:237513860|237514147 hsa-miR-370-3p 0 0 1
chr2:237513860|237514147 hsa-miR-326 0 0 1
chr2:237513860|237514147 hsa-miR-410-5p 0 0 1
chr2:237513860|237514147 hsa-miR-410-3p 0 0 1
chr2:237513860|237514147 hsa-miR-492 0 0 1
chr2:237513860|237514147 hsa-miR-612 0 1 1
chr2:237513860|237514147 hsa-miR-760 0 1 1
chr2:237513860|237514147 hsa-miR-920 0 0 1
chr2:237513860|237514147 hsa-miR-1237-5p 0 0 1
chr2:237513860|237514147 hsa-miR-1237-3p 0 0 1
chr2:237513860|237514147 hsa-miR-1288-5p 0 0 1
chr2:237513860|237514147 hsa-miR-1288-3p 0 0 1
chr2:237513860|237514147 hsa-miR-491-5p 0 1 1
chr2:237513860|237514147 hsa-miR-767-3p 0 0 1
chr2:237513860|237514147 hsa-miR-330-5p 0 0 1
chr2:237513860|237514147 hsa-miR-491-3p 0 0 1
chr2:237513860|237514147 hsa-miR-548c-3p 0 0 1
chr2:237513860|237514147 hsa-miR-1269 0 0 1
chr2:237513860|237514147 hsa-miR-664 0 0 1
chr2:237513860|237514147 hsa-miR-1285 0 0 1
chr2:237513860|237514147 hsa-miR-637 1 0 0
chr2:237513860|237514147 hsa-miR-762 1 0 0
chr2:237513860|237514147 hsa-miR-298 1 0 0
chr2:237513860|237514147 hsa-miR-892b 1 0 0
chr2:237513860|237514147 hsa-miR-1253 1 0 0
chr2:237513860|237514147 hsa-miR-3185 1 0 0
chr2:237513860|237514147 hsa-miR-4322 1 0 0
chr2:237513860|237514147 hsa-miR-4270 1 0 0
chr2:237513860|237514147 hsa-miR-4271 1 0 0
chr2:237513860|237514147 hsa-miR-3911 1 0 0
chr2:237513860|237514147 hsa-miR-3929 0 1 0
chr2:237513860|237514147 hsa-miR-378g 1 0 0
chr2:237513860|237514147 hsa-miR-4471 0 1 0
chr2:237513860|237514147 hsa-miR-4476 1 0 0
chr2:237513860|237514147 hsa-miR-4478 0 1 0
chr2:237513860|237514147 hsa-miR-4533 1 0 0
chr2:237513860|237514147 hsa-miR-4651 1 0 0
chr2:237513860|237514147 hsa-miR-4656 1 0 0
chr2:237513860|237514147 hsa-miR-4657 1 0 0
chr2:237513860|237514147 hsa-miR-4736 1 0 0
chr2:237513860|237514147 hsa-miR-4739 1 0 0
chr2:237513860|237514147 hsa-miR-4752 1 0 0
chr2:237513860|237514147 hsa-miR-5681a 0 1 0
chr2:237513860|237514147 hsa-miR-5683 0 1 0
chr2:237513860|237514147 hsa-miR-8057 0 1 0
chr2:237513860|237514147 hsa-miR-8077 1 1 0
chr2:237513860|237514147 hsa-miR-8085 1 0 0
chr2:237513860|237514147 hsa-miR-8071 1 1 0
chr2:237513860|237514147 hsa-miR-6089 1 0 0
chr2:237513860|237514147 hsa-miR-6867-5p 1 0 0
chr2:237513860|237514147 hsa-miR-505-5p 0 1 0
chr2:237513860|237514147 hsa-miR-3622b-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6806-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6873-3p 0 1 0
chr2:237513860|237514147 hsa-miR-6742-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6871-5p 0 1 0
chr2:237513860|237514147 hsa-miR-6748-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6793-5p 1 0 0
chr2:237513860|237514147 hsa-miR-3190-3p 1 0 0
chr2:237513860|237514147 hsa-miR-6827-5p 0 1 0
chr2:237513860|237514147 hsa-miR-6782-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6821-5p 1 0 0
chr2:237513860|237514147 hsa-miR-185-5p 1 0 0
chr2:237513860|237514147 hsa-miR-3191-5p 0 1 0
chr2:237513860|237514147 hsa-miR-6749-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6830-5p 1 0 0
chr2:237513860|237514147 hsa-miR-4800-5p 1 0 0
chr2:237513860|237514147 hsa-miR-493-5p 1 1 0
chr2:237513860|237514147 hsa-miR-6828-3p 0 1 0
chr2:237513860|237514147 hsa-miR-1180-5p 0 1 0
chr2:237513860|237514147 hsa-miR-3614-3p 0 1 0
chr2:237513860|237514147 hsa-miR-1298-3p 0 1 0
chr2:237513860|237514147 hsa-miR-367-5p 0 1 0
chr2:237513860|237514147 hsa-miR-1207-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6778-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6812-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6756-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6819-5p 1 0 0
chr2:237513860|237514147 hsa-miR-10401-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6722-3p 1 0 0
chr2:237513860|237514147 hsa-miR-6774-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6808-5p 1 0 0
chr2:237513860|237514147 hsa-miR-3620-5p 1 0 0
chr2:237513860|237514147 hsa-miR-5189-5p 0 1 0
chr2:237513860|237514147 hsa-miR-4745-5p 1 1 0
chr2:237513860|237514147 hsa-miR-6735-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6795-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6887-5p 1 0 0
chr2:237513860|237514147 hsa-miR-3187-5p 0 1 0
chr2:237513860|237514147 hsa-miR-4436b-3p 1 0 0
chr2:237513860|237514147 hsa-miR-4723-5p 1 0 0
chr2:237513860|237514147 hsa-miR-1238-5p 0 1 0
chr2:237513860|237514147 hsa-miR-4758-5p 1 1 0
chr2:237513860|237514147 hsa-miR-4769-5p 1 0 0
chr2:237513860|237514147 hsa-miR-1910-3p 0 1 0
chr2:237513860|237514147 hsa-miR-6856-5p 1 0 0
chr2:237513860|237514147 hsa-miR-4646-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6750-5p 1 0 0
chr2:237513860|237514147 hsa-miR-6790-5p 1 0 0
chr2:237513860|237514147 hsa-miR-10397-5p 0 1 0
chr2:237513860|237514147 hsa-miR-363-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:237513860|237514147
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MNLSIKMDNFPASVGLYSEGSHVYTVNTFLNLLSNESAFYEMIFQ
Nucleotide Sequence TTGAACCTAAGCATAAAAATGGACAATTTCCCTGCATCTGTGGGTCTGTATTCTGAAGGCTCCCATGTATACACGGTAAACACATTTCTAAATCTTTTGTCCAATGAATCTGCCTTTTACGAGATGATTTTTCAGTGA
CircID chr2:237513860|237514147
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MLGSPLSLLAAGPALLYNLLSTRSPPFLEPKHKNGQFPCICGSVF
Nucleotide Sequence TTGCTAGGTTCCCCACTCAGCCTATTAGCAGCAGGTCCGGCCTTGTTATATAATCTTCTTTCCACACGCAGTCCACCCTTTCTTGAACCTAAGCATAAAAATGGACAATTTCCCTGCATCTGTGGGTCTGTATTCTGA
CircID chr2:237513860|237514147
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MDKRFRNVFTVYTWEPSEYRPTDAGKLSIFMLRFKKGWTACGKKII
Nucleotide Sequence TTGGACAAAAGATTTAGAAATGTGTTTACCGTGTATACATGGGAGCCTTCAGAATACAGACCCACAGATGCAGGGAAATTGTCCATTTTTATGCTTAGGTTCAAGAAAGGGTGGACTGCGTGTGGAAAGAAGATTATATAA
CircID chr2:237513860|237514147
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MCLPCIHGSLQNTDPQMQGNCPFLCLGSRKGGLRVERRLYNKAGPAANRLSGEPSKV
Nucleotide Sequence ATGTGTTTACCGTGTATACATGGGAGCCTTCAGAATACAGACCCACAGATGCAGGGAAATTGTCCATTTTTATGCTTAGGTTCAAGAAAGGGTGGACTGCGTGTGGAAAGAAGATTATATAACAAGGCCGGACCTGCTGCTAATAGGCTGAGTGGGGAACCTAGCAAGGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab