CircRNA Information

General Information
circRNA Basic Information
CircID chr2:237553604|237553739
Strand -
CircType exon
Host Gene ENSG00000115648.12;
Algorism CIRI2;
Sequence AGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:237553604|237553739 hsa-miR-148a-5p 0 0 1
chr2:237553604|237553739 hsa-miR-148a-3p 0 0 1
chr2:237553604|237553739 hsa-miR-152-5p 0 0 1
chr2:237553604|237553739 hsa-miR-152-3p 0 0 1
chr2:237553604|237553739 hsa-miR-134-5p 0 0 1
chr2:237553604|237553739 hsa-miR-134-3p 0 0 1
chr2:237553604|237553739 hsa-miR-148b-5p 0 0 1
chr2:237553604|237553739 hsa-miR-148b-3p 0 0 1
chr2:237553604|237553739 hsa-miR-570-5p 0 0 1
chr2:237553604|237553739 hsa-miR-570-3p 0 0 1
chr2:237553604|237553739 hsa-miR-578 0 0 1
chr2:237553604|237553739 hsa-miR-593-5p 0 0 1
chr2:237553604|237553739 hsa-miR-593-3p 0 0 1
chr2:237553604|237553739 hsa-miR-892a 0 0 1
chr2:237553604|237553739 hsa-miR-943 0 0 1
chr2:237553604|237553739 hsa-miR-1237-5p 0 0 1
chr2:237553604|237553739 hsa-miR-1237-3p 0 0 1
chr2:237553604|237553739 hsa-miR-1248 0 1 1
chr2:237553604|237553739 hsa-miR-1289 0 0 1
chr2:237553604|237553739 hsa-miR-1302 0 0 1
chr2:237553604|237553739 hsa-miR-4298 1 0 0
chr2:237553604|237553739 hsa-miR-2392 0 1 0
chr2:237553604|237553739 hsa-miR-3978 0 1 0
chr2:237553604|237553739 hsa-miR-5090 1 0 0
chr2:237553604|237553739 hsa-miR-5190 1 0 0
chr2:237553604|237553739 hsa-miR-6132 0 1 0
chr2:237553604|237553739 hsa-miR-8054 0 1 0
chr2:237553604|237553739 hsa-miR-6728-5p 1 0 0
chr2:237553604|237553739 hsa-miR-6515-5p 0 1 0
chr2:237553604|237553739 hsa-miR-6873-5p 1 1 0
chr2:237553604|237553739 hsa-miR-6880-5p 1 1 0
chr2:237553604|237553739 hsa-miR-4722-5p 1 0 0
chr2:237553604|237553739 hsa-miR-7845-5p 1 1 0
chr2:237553604|237553739 hsa-miR-3190-3p 0 1 0
chr2:237553604|237553739 hsa-miR-3126-5p 0 1 0
chr2:237553604|237553739 hsa-miR-4640-5p 1 0 0
chr2:237553604|237553739 hsa-miR-92b-5p 1 1 0
chr2:237553604|237553739 hsa-miR-6834-5p 1 1 0
chr2:237553604|237553739 hsa-miR-149-3p 1 0 0
chr2:237553604|237553739 hsa-miR-4727-3p 0 1 0
chr2:237553604|237553739 hsa-miR-1233-5p 0 1 0
chr2:237553604|237553739 hsa-miR-6778-5p 0 1 0
chr2:237553604|237553739 hsa-miR-6787-5p 1 0 0
chr2:237553604|237553739 hsa-miR-6754-5p 1 0 0
chr2:237553604|237553739 hsa-miR-6756-5p 1 0 0
chr2:237553604|237553739 hsa-miR-6803-5p 1 0 0
chr2:237553604|237553739 hsa-miR-1249-5p 0 1 0
chr2:237553604|237553739 hsa-miR-6797-5p 1 1 0
chr2:237553604|237553739 hsa-miR-6795-5p 1 0 0
chr2:237553604|237553739 hsa-miR-4472 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:237553604|237553739
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MALCFPLYTVTVPMRNKKEHPPHGLP
Nucleotide Sequence TTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCA
CircID chr2:237553604|237553739
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MFSLHHSHPVPHWLCAFHYTQSPSQ
Nucleotide Sequence CTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGA
CircID chr2:237553604|237553739
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MHCFPSTTAILSLIGSVLSTIHSHRPNEKQEGAPSTWTP
Nucleotide Sequence CTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCC
CircID chr2:237553604|237553739
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MCIVESTEPMRDRMAVVEGKQCRAALSL
Nucleotide Sequence CTGTGTATAGTGGAAAGCACAGAGCCAATGAGGGACAGGATGGCTGTGGTGGAGGGAAAACAGTGCAGGGCTGCTCTGTCTCTC
CircID chr2:237553604|237553739
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MFLIGTVTVYSGKHRANEGQDGCGGGKTVQGCSVS
Nucleotide Sequence TTGTTTCTCATTGGGACGGTGACTGTGTATAGTGGAAAGCACAGAGCCAATGAGGGACAGGATGGCTGTGGTGGAGGGAAAACAGTGCAGGGCTGCTCTGTCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab