CircRNA Information

General Information
circRNA Basic Information
CircID chr2:240688492|240688697
Strand -
CircType exon
Host Gene ENSG00000219159.4;
Algorism CIRI2;
Sequence CCAGAGGAGTGCACAGGACAGGTAGGCAGAGGGTTCAGGGGCCACCTTCCAATGGGGTGAGGCTGAGGAGAGGGTGCTGTGAGCTGAGCAAGGACCCCACTCCATTTCAGCTCGTCTCCCCCGAGAGCCACAGGGAGTGCTGGACCCGCCTGAGCGGGGGGCATATGGGGCTCAGCACAGCACTGTGGGGCCTGGATGAGAAGCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:240688492|240688697 hsa-miR-122-5p 0 0 1
chr2:240688492|240688697 hsa-miR-122-3p 0 0 1
chr2:240688492|240688697 hsa-miR-760 0 0 1
chr2:240688492|240688697 hsa-miR-1178-5p 0 0 1
chr2:240688492|240688697 hsa-miR-1178-3p 0 0 1
chr2:240688492|240688697 hsa-miR-663b 1 0 1
chr2:240688492|240688697 hsa-miR-1225-3p 1 1 1
chr2:240688492|240688697 hsa-miR-512-3p 0 1 1
chr2:240688492|240688697 hsa-miR-615-5p 1 1 1
chr2:240688492|240688697 hsa-miR-339-5p 0 0 1
chr2:240688492|240688697 hsa-miR-502-5p 0 0 1
chr2:240688492|240688697 hsa-miR-338-3p 0 0 1
chr2:240688492|240688697 hsa-miR-483-3p 0 0 1
chr2:240688492|240688697 hsa-miR-1274a 0 0 1
chr2:240688492|240688697 hsa-miR-1233 0 0 1
chr2:240688492|240688697 hsa-miR-128 0 0 1
chr2:240688492|240688697 hsa-miR-1274b 0 0 1
chr2:240688492|240688697 hsa-miR-203 0 0 1
chr2:240688492|240688697 hsa-miR-596 1 0 0
chr2:240688492|240688697 hsa-miR-1470 1 0 0
chr2:240688492|240688697 hsa-miR-3155a 0 1 0
chr2:240688492|240688697 hsa-miR-3175 0 1 0
chr2:240688492|240688697 hsa-miR-4297 1 0 0
chr2:240688492|240688697 hsa-miR-4323 0 1 0
chr2:240688492|240688697 hsa-miR-4284 0 1 0
chr2:240688492|240688697 hsa-miR-3937 1 1 0
chr2:240688492|240688697 hsa-miR-3155b 0 1 0
chr2:240688492|240688697 hsa-miR-4663 0 1 0
chr2:240688492|240688697 hsa-miR-4780 1 1 0
chr2:240688492|240688697 hsa-miR-5193 0 1 0
chr2:240688492|240688697 hsa-miR-8057 0 1 0
chr2:240688492|240688697 hsa-miR-9898 1 0 0
chr2:240688492|240688697 hsa-miR-6749-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6747-3p 1 1 0
chr2:240688492|240688697 hsa-miR-4687-3p 1 0 0
chr2:240688492|240688697 hsa-miR-1233-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6892-3p 1 1 0
chr2:240688492|240688697 hsa-miR-210-5p 0 1 0
chr2:240688492|240688697 hsa-miR-139-3p 0 1 0
chr2:240688492|240688697 hsa-miR-6727-5p 1 0 0
chr2:240688492|240688697 hsa-miR-3189-5p 1 1 0
chr2:240688492|240688697 hsa-miR-4728-3p 0 1 0
chr2:240688492|240688697 hsa-miR-6787-3p 1 1 0
chr2:240688492|240688697 hsa-miR-6845-3p 1 1 0
chr2:240688492|240688697 hsa-miR-877-3p 1 1 0
chr2:240688492|240688697 hsa-miR-6868-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6514-5p 0 1 0
chr2:240688492|240688697 hsa-miR-6735-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6716-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6815-3p 0 1 0
chr2:240688492|240688697 hsa-miR-7109-3p 1 0 0
chr2:240688492|240688697 hsa-miR-939-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6772-3p 1 0 0
chr2:240688492|240688697 hsa-miR-4763-5p 1 0 0
chr2:240688492|240688697 hsa-miR-5187-3p 1 0 0
chr2:240688492|240688697 hsa-miR-2277-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6894-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6803-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6514-3p 1 1 0
chr2:240688492|240688697 hsa-miR-5001-3p 1 1 0
chr2:240688492|240688697 hsa-miR-7113-3p 1 1 0
chr2:240688492|240688697 hsa-miR-7111-3p 1 1 0
chr2:240688492|240688697 hsa-miR-6780a-3p 0 1 0
chr2:240688492|240688697 hsa-miR-1266-3p 1 0 0
chr2:240688492|240688697 hsa-miR-146b-3p 0 1 0
chr2:240688492|240688697 hsa-miR-4640-3p 1 0 0
chr2:240688492|240688697 hsa-miR-7112-5p 1 0 0
chr2:240688492|240688697 hsa-miR-4707-5p 0 1 0
chr2:240688492|240688697 hsa-miR-7106-3p 1 0 0
chr2:240688492|240688697 hsa-miR-3619-3p 1 0 0
chr2:240688492|240688697 hsa-miR-4758-3p 0 1 0
chr2:240688492|240688697 hsa-miR-6778-3p 1 0 0
chr2:240688492|240688697 hsa-miR-383-3p 0 1 0
chr2:240688492|240688697 hsa-miR-2276-5p 1 1 0
chr2:240688492|240688697 hsa-miR-6871-3p 0 1 0
chr2:240688492|240688697 hsa-miR-216a-3p 0 1 0
chr2:240688492|240688697 hsa-miR-6865-3p 1 1 0
chr2:240688492|240688697 hsa-miR-1914-5p 1 0 0
chr2:240688492|240688697 hsa-miR-6738-3p 1 0 0
chr2:240688492|240688697 hsa-miR-328-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6748-3p 1 1 0
chr2:240688492|240688697 hsa-miR-3670 1 1 0
chr2:240688492|240688697 hsa-miR-6800-3p 1 1 0
chr2:240688492|240688697 hsa-miR-18b-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6816-5p 1 0 0
chr2:240688492|240688697 hsa-miR-6870-5p 1 1 0
chr2:240688492|240688697 hsa-miR-6815-5p 0 1 0
chr2:240688492|240688697 hsa-miR-4745-5p 0 1 0
chr2:240688492|240688697 hsa-miR-6795-5p 0 1 0
chr2:240688492|240688697 hsa-miR-6887-5p 0 1 0
chr2:240688492|240688697 hsa-miR-4723-5p 0 1 0
chr2:240688492|240688697 hsa-miR-1199-5p 1 0 0
chr2:240688492|240688697 hsa-miR-6877-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6791-5p 1 0 0
chr2:240688492|240688697 hsa-miR-6893-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6784-3p 0 1 0
chr2:240688492|240688697 hsa-miR-6805-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6810-3p 1 0 0
chr2:240688492|240688697 hsa-miR-125a-5p 1 1 0
chr2:240688492|240688697 hsa-miR-3059-5p 1 0 0
chr2:240688492|240688697 hsa-miR-6751-3p 1 1 0
chr2:240688492|240688697 hsa-miR-6769b-3p 1 0 0
chr2:240688492|240688697 hsa-miR-4756-5p 1 0 0
chr2:240688492|240688697 hsa-miR-3144-3p 1 0 0
chr2:240688492|240688697 hsa-miR-6737-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr2:240688492|240688697
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MRRGCCELSKDPTPFQLVSPESHRECWTRLSGGHMGLSTALWGLDEKP
Nucleotide Sequence CTGAGGAGAGGGTGCTGTGAGCTGAGCAAGGACCCCACTCCATTTCAGCTCGTCTCCCCCGAGAGCCACAGGGAGTGCTGGACCCGCCTGAGCGGGGGGCATATGGGGCTCAGCACAGCACTGTGGGGCCTGGATGAGAAGCCG
CircID chr2:240688492|240688697
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MPPAQAGPALPVALGGDELKWSGVLAQLTAPSPQPHPIGRWPLNPLPTCPVHSS
Nucleotide Sequence ATGCCCCCCGCTCAGGCGGGTCCAGCACTCCCTGTGGCTCTCGGGGGAGACGAGCTGAAATGGAGTGGGGTCCTTGCTCAGCTCACAGCACCCTCTCCTCAGCCTCACCCCATTGGAAGGTGGCCCCTGAACCCTCTGCCTACCTGTCCTGTGCACTCCTCT
CircID chr2:240688492|240688697
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MEWGPCSAHSTLSSASPHWKVAPEPSAYLSCALLW
Nucleotide Sequence ATGGAGTGGGGTCCTTGCTCAGCTCACAGCACCCTCTCCTCAGCCTCACCCCATTGGAAGGTGGCCCCTGAACCCTCTGCCTACCTGTCCTGTGCACTCCTCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab