CircRNA Information

General Information
circRNA Basic Information
CircID chr2:241235156|241235520
Strand -
CircType exon
Host Gene ENSG00000115677.15;
Algorism CIRI2;
Sequence GCTCCAGCAGTCCAGCCTTGGCCCGGTCCAAATTTGCAGCGAGGCCCGTGATGGCGATGATGTCAGACTGCAGCTCAGGTGCCGGGACATGTATGTTCACCTACGTGAAGAGGGGGCTGACTTGACGTTCAGGACCCCAGAGAACAGGAAAGAGTCCATTGGCCCTGGGACCCAGAAGTGGTGAGAGGGAAGGCCACCCGCCGTGAAGGGAAGTCAGTGCCCAGTCCGAGCAGGAGGAGGCAGAGTCAACAGGAAGTTGAGAAAGGACACTGGCACTCGGGAGAGGATGCGACAGGCCACTCCTGTGACATGGCCTCCCGGGAAAGGGGTCTACCTCAAACTCATCCATCATCTTGCGGATCCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:241235156|241235520 hsa-let-7b-5p 0 0 1
chr2:241235156|241235520 hsa-let-7b-3p 0 0 1
chr2:241235156|241235520 hsa-let-7c-5p 0 0 1
chr2:241235156|241235520 hsa-let-7c-3p 0 0 1
chr2:241235156|241235520 hsa-let-7d-5p 0 0 1
chr2:241235156|241235520 hsa-let-7d-3p 0 0 1
chr2:241235156|241235520 hsa-let-7e-5p 0 0 1
chr2:241235156|241235520 hsa-let-7e-3p 0 0 1
chr2:241235156|241235520 hsa-miR-98-5p 0 0 1
chr2:241235156|241235520 hsa-miR-98-3p 0 0 1
chr2:241235156|241235520 hsa-miR-197-5p 0 0 1
chr2:241235156|241235520 hsa-miR-197-3p 0 0 1
chr2:241235156|241235520 hsa-miR-204-5p 0 0 1
chr2:241235156|241235520 hsa-miR-204-3p 0 0 1
chr2:241235156|241235520 hsa-miR-211-5p 0 0 1
chr2:241235156|241235520 hsa-miR-211-3p 0 0 1
chr2:241235156|241235520 hsa-let-7g-5p 0 0 1
chr2:241235156|241235520 hsa-let-7g-3p 0 0 1
chr2:241235156|241235520 hsa-let-7i-5p 0 0 1
chr2:241235156|241235520 hsa-let-7i-3p 0 0 1
chr2:241235156|241235520 hsa-miR-370-5p 0 0 1
chr2:241235156|241235520 hsa-miR-370-3p 0 0 1
chr2:241235156|241235520 hsa-miR-379-5p 0 0 1
chr2:241235156|241235520 hsa-miR-379-3p 0 0 1
chr2:241235156|241235520 hsa-miR-326 0 0 1
chr2:241235156|241235520 hsa-miR-422a 0 0 1
chr2:241235156|241235520 hsa-miR-412-5p 0 0 1
chr2:241235156|241235520 hsa-miR-412-3p 0 0 1
chr2:241235156|241235520 hsa-miR-489-5p 0 0 1
chr2:241235156|241235520 hsa-miR-489-3p 0 0 1
chr2:241235156|241235520 hsa-miR-202-5p 0 0 1
chr2:241235156|241235520 hsa-miR-202-3p 0 0 1
chr2:241235156|241235520 hsa-miR-558 0 0 1
chr2:241235156|241235520 hsa-miR-612 0 1 1
chr2:241235156|241235520 hsa-miR-617 0 1 1
chr2:241235156|241235520 hsa-miR-622 0 0 1
chr2:241235156|241235520 hsa-miR-623 0 0 1
chr2:241235156|241235520 hsa-miR-637 0 0 1
chr2:241235156|241235520 hsa-miR-638 1 0 1
chr2:241235156|241235520 hsa-miR-639 0 1 1
chr2:241235156|241235520 hsa-miR-1229-5p 0 0 1
chr2:241235156|241235520 hsa-miR-1229-3p 0 0 1
chr2:241235156|241235520 hsa-miR-1287-5p 0 0 1
chr2:241235156|241235520 hsa-miR-1287-3p 0 0 1
chr2:241235156|241235520 hsa-miR-1304-5p 0 0 1
chr2:241235156|241235520 hsa-miR-1304-3p 0 0 1
chr2:241235156|241235520 hsa-miR-1255a 0 0 1
chr2:241235156|241235520 hsa-miR-1267 0 0 1
chr2:241235156|241235520 hsa-miR-1288-5p 0 0 1
chr2:241235156|241235520 hsa-miR-1288-3p 0 0 1
chr2:241235156|241235520 hsa-miR-513c-5p 0 0 1
chr2:241235156|241235520 hsa-miR-513c-3p 0 0 1
chr2:241235156|241235520 hsa-miR-423-3p 1 0 1
chr2:241235156|241235520 hsa-miR-615-5p 0 0 1
chr2:241235156|241235520 hsa-miR-199a-5p 0 1 1
chr2:241235156|241235520 hsa-miR-513a-5p 0 1 1
chr2:241235156|241235520 hsa-miR-199b-5p 0 1 1
chr2:241235156|241235520 hsa-miR-769-3p 0 1 1
chr2:241235156|241235520 hsa-miR-330-5p 0 1 1
chr2:241235156|241235520 hsa-miR-450b-3p 0 0 1
chr2:241235156|241235520 hsa-miR-220b 0 0 1
chr2:241235156|241235520 hsa-miR-642 0 0 1
chr2:241235156|241235520 hsa-miR-1255b 0 0 1
chr2:241235156|241235520 hsa-miR-220c 0 0 1
chr2:241235156|241235520 hsa-miR-378 0 0 1
chr2:241235156|241235520 hsa-miR-1269 0 0 1
chr2:241235156|241235520 hsa-let-7a 0 0 1
chr2:241235156|241235520 hsa-let-7f 0 0 1
chr2:241235156|241235520 hsa-miR-1285 0 0 1
chr2:241235156|241235520 hsa-miR-720 0 0 1
chr2:241235156|241235520 hsa-miR-886-3p 0 0 1
chr2:241235156|241235520 hsa-miR-602 1 0 0
chr2:241235156|241235520 hsa-miR-1256 0 1 0
chr2:241235156|241235520 hsa-miR-1538 1 0 0
chr2:241235156|241235520 hsa-miR-2861 1 0 0
chr2:241235156|241235520 hsa-miR-378b 0 1 0
chr2:241235156|241235520 hsa-miR-3135a 1 0 0
chr2:241235156|241235520 hsa-miR-378c 0 1 0
chr2:241235156|241235520 hsa-miR-3917 0 1 0
chr2:241235156|241235520 hsa-miR-3929 1 0 0
chr2:241235156|241235520 hsa-miR-3943 0 1 0
chr2:241235156|241235520 hsa-miR-378e 0 1 0
chr2:241235156|241235520 hsa-miR-378f 0 1 0
chr2:241235156|241235520 hsa-miR-4449 1 1 0
chr2:241235156|241235520 hsa-miR-4512 1 0 0
chr2:241235156|241235520 hsa-miR-4522 0 1 0
chr2:241235156|241235520 hsa-miR-4647 1 0 0
chr2:241235156|241235520 hsa-miR-5193 0 1 0
chr2:241235156|241235520 hsa-miR-6088 1 0 0
chr2:241235156|241235520 hsa-miR-12122 0 1 0
chr2:241235156|241235520 hsa-miR-4433b-3p 0 1 0
chr2:241235156|241235520 hsa-miR-7155-5p 0 1 0
chr2:241235156|241235520 hsa-miR-1247-3p 0 1 0
chr2:241235156|241235520 hsa-miR-4433a-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6836-3p 0 1 0
chr2:241235156|241235520 hsa-miR-136-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6894-5p 1 0 0
chr2:241235156|241235520 hsa-miR-6892-3p 0 1 0
chr2:241235156|241235520 hsa-miR-27a-5p 1 0 0
chr2:241235156|241235520 hsa-miR-4722-5p 1 0 0
chr2:241235156|241235520 hsa-miR-6727-5p 1 0 0
chr2:241235156|241235520 hsa-miR-7110-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6787-3p 1 0 0
chr2:241235156|241235520 hsa-miR-6735-3p 1 1 0
chr2:241235156|241235520 hsa-miR-6852-5p 0 1 0
chr2:241235156|241235520 hsa-miR-1909-5p 1 1 0
chr2:241235156|241235520 hsa-miR-4640-5p 1 0 0
chr2:241235156|241235520 hsa-miR-5001-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6771-5p 0 1 0
chr2:241235156|241235520 hsa-miR-4713-3p 1 1 0
chr2:241235156|241235520 hsa-miR-6749-5p 1 0 0
chr2:241235156|241235520 hsa-miR-1266-3p 0 1 0
chr2:241235156|241235520 hsa-miR-4757-3p 1 0 0
chr2:241235156|241235520 hsa-miR-6886-5p 1 0 0
chr2:241235156|241235520 hsa-miR-6877-5p 1 0 0
chr2:241235156|241235520 hsa-miR-4776-3p 1 1 0
chr2:241235156|241235520 hsa-miR-660-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6719-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6738-3p 0 1 0
chr2:241235156|241235520 hsa-miR-2277-5p 1 0 0
chr2:241235156|241235520 hsa-miR-130b-5p 0 1 0
chr2:241235156|241235520 hsa-miR-6734-3p 1 1 0
chr2:241235156|241235520 hsa-miR-598-3p 1 1 0
chr2:241235156|241235520 hsa-miR-4755-5p 0 1 0
chr2:241235156|241235520 hsa-miR-5189-5p 0 1 0
chr2:241235156|241235520 hsa-miR-10392-5p 1 0 0
chr2:241235156|241235520 hsa-miR-10396a-5p 1 0 0
chr2:241235156|241235520 hsa-miR-4649-5p 1 0 0
chr2:241235156|241235520 hsa-miR-4685-5p 0 1 0
chr2:241235156|241235520 hsa-miR-4726-5p 1 0 0
chr2:241235156|241235520 hsa-miR-6729-5p 1 0 0
chr2:241235156|241235520 hsa-miR-6791-3p 0 1 0
chr2:241235156|241235520 hsa-miR-378a-3p 0 1 0
chr2:241235156|241235520 hsa-miR-2682-3p 1 0 0
chr2:241235156|241235520 hsa-miR-7107-3p 1 1 0
chr2:241235156|241235520 hsa-miR-6511a-3p 0 1 0
chr2:241235156|241235520 hsa-miR-5009-5p 1 1 0
chr2:241235156|241235520 hsa-miR-6829-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6837-5p 0 1 0
chr2:241235156|241235520 hsa-miR-6511b-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6764-5p 0 1 0
chr2:241235156|241235520 hsa-miR-6833-3p 0 1 0
chr2:241235156|241235520 hsa-miR-3622b-3p 0 1 0
chr2:241235156|241235520 hsa-miR-6814-3p 1 0 0
chr2:241235156|241235520 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr2:241235156|241235520
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MQLRCRDMYVHLREEGADLTFRTPENRKESIGPGTQKW
Nucleotide Sequence CTGCAGCTCAGGTGCCGGGACATGTATGTTCACCTACGTGAAGAGGGGGCTGACTTGACGTTCAGGACCCCAGAGAACAGGAAAGAGTCCATTGGCCCTGGGACCCAGAAGTGGTGA
CircID chr2:241235156|241235520
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MRKDTGTRERMRQATPVTWPPGKGVYLKLIHHLADP
Nucleotide Sequence TTGAGAAAGGACACTGGCACTCGGGAGAGGATGCGACAGGCCACTCCTGTGACATGGCCTCCCGGGAAAGGGGTCTACCTCAAACTCATCCATCATCTTGCGGATCCC
CircID chr2:241235156|241235520
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MARSKFAARPVMAMMSDCSSGAGTCMFTYVKRGLT
Nucleotide Sequence TTGGCCCGGTCCAAATTTGCAGCGAGGCCCGTGATGGCGATGATGTCAGACTGCAGCTCAGGTGCCGGGACATGTATGTTCACCTACGTGAAGAGGGGGCTGACTTGA
CircID chr2:241235156|241235520
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MLGLGTDFPSRRVAFPLTTSGSQGQWTLSCSLGS
Nucleotide Sequence CTGCTCGGACTGGGCACTGACTTCCCTTCACGGCGGGTGGCCTTCCCTCTCACCACTTCTGGGTCCCAGGGCCAATGGACTCTTTCCTGTTCTCTGGGGTCCTGA
CircID chr2:241235156|241235520
ORF Type ORF5
Protein Length 83
Nucleotide Length 252
Protein Sequence MMDEFEVDPFPGRPCHRSGLSHPLPSASVLSQLPVDSASSCSDWALTSLHGGWPSLSPLLGPRANGLFPVLWGPERQVSPLFT
Nucleotide Sequence ATGATGGATGAGTTTGAGGTAGACCCCTTTCCCGGGAGGCCATGTCACAGGAGTGGCCTGTCGCATCCTCTCCCGAGTGCCAGTGTCCTTTCTCAACTTCCTGTTGACTCTGCCTCCTCCTGCTCGGACTGGGCACTGACTTCCCTTCACGGCGGGTGGCCTTCCCTCTCACCACTTCTGGGTCCCAGGGCCAATGGACTCTTTCCTGTTCTCTGGGGTCCTGAACGTCAAGTCAGCCCCCTCTTCACGTAG
CircID chr2:241235156|241235520
ORF Type ORF6
Protein Length 30
Nucleotide Length 90
Protein Sequence MSRHLSCSLTSSPSRASLQIWTGPRLDCWS
Nucleotide Sequence ATGTCCCGGCACCTGAGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTTGGACCGGGCCAAGGCTGGACTGCTGGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab