CircRNA Information

General Information
circRNA Basic Information
CircID chr2:25928449|25928582
Strand +
CircType exon
Host Gene ENSG00000084731.12;
Algorism CIRI2;
Sequence CTCCATCTTCTCCCACACTGATGGCGAGCAGCCCCTGAGCACTTTCTGGGACTGGGAGACTGCTTGGTGTTCCCTGAGGACAAGAGACATCCTGACAGTGTTGGGCATCTGCTCCCCGTGGACACAGCCCCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:25928449|25928582 hsa-miR-17-5p 0 0 1
chr2:25928449|25928582 hsa-miR-17-3p 0 0 1
chr2:25928449|25928582 hsa-miR-20a-5p 0 0 1
chr2:25928449|25928582 hsa-miR-20a-3p 0 0 1
chr2:25928449|25928582 hsa-miR-93-5p 0 0 1
chr2:25928449|25928582 hsa-miR-93-3p 0 0 1
chr2:25928449|25928582 hsa-miR-106a-5p 0 0 1
chr2:25928449|25928582 hsa-miR-106a-3p 0 0 1
chr2:25928449|25928582 hsa-miR-141-5p 0 0 1
chr2:25928449|25928582 hsa-miR-141-3p 0 0 1
chr2:25928449|25928582 hsa-miR-150-5p 0 0 1
chr2:25928449|25928582 hsa-miR-150-3p 0 0 1
chr2:25928449|25928582 hsa-miR-106b-5p 0 0 1
chr2:25928449|25928582 hsa-miR-106b-3p 0 0 1
chr2:25928449|25928582 hsa-miR-200a-5p 0 0 1
chr2:25928449|25928582 hsa-miR-200a-3p 0 0 1
chr2:25928449|25928582 hsa-miR-302a-5p 0 0 1
chr2:25928449|25928582 hsa-miR-302a-3p 0 0 1
chr2:25928449|25928582 hsa-miR-302b-5p 0 0 1
chr2:25928449|25928582 hsa-miR-302b-3p 0 0 1
chr2:25928449|25928582 hsa-miR-302c-5p 0 0 1
chr2:25928449|25928582 hsa-miR-302c-3p 0 0 1
chr2:25928449|25928582 hsa-miR-302d-5p 0 0 1
chr2:25928449|25928582 hsa-miR-302d-3p 0 0 1
chr2:25928449|25928582 hsa-miR-372-5p 0 0 1
chr2:25928449|25928582 hsa-miR-372-3p 0 0 1
chr2:25928449|25928582 hsa-miR-373-5p 0 0 1
chr2:25928449|25928582 hsa-miR-373-3p 0 0 1
chr2:25928449|25928582 hsa-miR-20b-5p 0 0 1
chr2:25928449|25928582 hsa-miR-20b-3p 0 0 1
chr2:25928449|25928582 hsa-miR-520e-5p 0 0 1
chr2:25928449|25928582 hsa-miR-520e-3p 0 0 1
chr2:25928449|25928582 hsa-miR-520b-5p 0 0 1
chr2:25928449|25928582 hsa-miR-520b-3p 0 0 1
chr2:25928449|25928582 hsa-miR-519d-5p 0 0 1
chr2:25928449|25928582 hsa-miR-519d-3p 0 0 1
chr2:25928449|25928582 hsa-miR-593-5p 0 0 1
chr2:25928449|25928582 hsa-miR-593-3p 0 0 1
chr2:25928449|25928582 hsa-miR-939-5p 0 0 1
chr2:25928449|25928582 hsa-miR-939-3p 0 0 1
chr2:25928449|25928582 hsa-miR-1253 0 0 1
chr2:25928449|25928582 hsa-miR-1265 0 0 1
chr2:25928449|25928582 hsa-miR-1266-5p 0 0 1
chr2:25928449|25928582 hsa-miR-1266-3p 0 0 1
chr2:25928449|25928582 hsa-miR-302e 0 0 1
chr2:25928449|25928582 hsa-miR-532-3p 0 0 1
chr2:25928449|25928582 hsa-miR-520d-3p 0 0 1
chr2:25928449|25928582 hsa-miR-520a-3p 0 0 1
chr2:25928449|25928582 hsa-miR-520c-3p 0 0 1
chr2:25928449|25928582 hsa-miR-608 1 0 0
chr2:25928449|25928582 hsa-miR-3909 1 0 0
chr2:25928449|25928582 hsa-miR-4518 0 1 0
chr2:25928449|25928582 hsa-miR-4675 0 1 0
chr2:25928449|25928582 hsa-miR-4741 1 1 0
chr2:25928449|25928582 hsa-miR-6081 0 1 0
chr2:25928449|25928582 hsa-miR-6085 1 0 0
chr2:25928449|25928582 hsa-miR-12128 0 1 0
chr2:25928449|25928582 hsa-miR-6762-3p 0 1 0
chr2:25928449|25928582 hsa-miR-6742-5p 1 0 0
chr2:25928449|25928582 hsa-miR-185-3p 0 1 0
chr2:25928449|25928582 hsa-miR-6760-5p 0 1 0
chr2:25928449|25928582 hsa-miR-4713-5p 0 1 0
chr2:25928449|25928582 hsa-miR-30c-2-3p 0 1 0
chr2:25928449|25928582 hsa-miR-6818-3p 0 1 0
chr2:25928449|25928582 hsa-miR-4646-3p 1 0 0
chr2:25928449|25928582 hsa-miR-1296-3p 0 1 0
chr2:25928449|25928582 hsa-miR-6778-5p 0 1 0
chr2:25928449|25928582 hsa-miR-5001-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6752-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6813-5p 0 1 0
chr2:25928449|25928582 hsa-miR-7110-5p 1 0 0
chr2:25928449|25928582 hsa-miR-10401-5p 0 1 0
chr2:25928449|25928582 hsa-miR-6788-5p 0 1 0
chr2:25928449|25928582 hsa-miR-328-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6846-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6848-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6889-5p 0 1 0
chr2:25928449|25928582 hsa-miR-30c-1-3p 0 1 0
chr2:25928449|25928582 hsa-miR-6855-5p 1 0 0
chr2:25928449|25928582 hsa-miR-6750-5p 0 1 0
chr2:25928449|25928582 hsa-miR-5588-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:25928449|25928582
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MGLGDCLVFPEDKRHPDSVGHLLPVDTAP
Nucleotide Sequence CTGGGACTGGGAGACTGCTTGGTGTTCCCTGAGGACAAGAGACATCCTGACAGTGTTGGGCATCTGCTCCCCGTGGACACAGCCCCA
CircID chr2:25928449|25928582
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MSTFWDWETAWCSLRTRDILTVLGICSPWTQPH
Nucleotide Sequence CTGAGCACTTTCTGGGACTGGGAGACTGCTTGGTGTTCCCTGAGGACAAGAGACATCCTGACAGTGTTGGGCATCTGCTCCCCGTGGACACAGCCCCAC
CircID chr2:25928449|25928582
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MSGCLLSSGNTKQSPSPRKCSGAARHQCGRRW
Nucleotide Sequence CTGTCAGGATGTCTCTTGTCCTCAGGGAACACCAAGCAGTCTCCCAGTCCCAGAAAGTGCTCAGGGGCTGCTCGCCATCAGTGTGGGAGAAGATGG
CircID chr2:25928449|25928582
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MCPRGADAQHCQDVSCPQGTPSSLPVPESAQGLLAISVGEDG
Nucleotide Sequence CTGTGTCCACGGGGAGCAGATGCCCAACACTGTCAGGATGTCTCTTGTCCTCAGGGAACACCAAGCAGTCTCCCAGTCCCAGAAAGTGCTCAGGGGCTGCTCGCCATCAGTGTGGGAGAAGATGGA
CircID chr2:25928449|25928582
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MPNTVRMSLVLREHQAVSQSQKVLRGCSPSVWEKME
Nucleotide Sequence ATGCCCAACACTGTCAGGATGTCTCTTGTCCTCAGGGAACACCAAGCAGTCTCCCAGTCCCAGAAAGTGCTCAGGGGCTGCTCGCCATCAGTGTGGGAGAAGATGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab