CircRNA Information

General Information
circRNA Basic Information
CircID chr2:27130912|27131227
Strand -
CircType exon
Host Gene ENSG00000138073.12;
Algorism CIRI2;
Sequence CCCCAGATTACTACCCAAGTCTTCCTTTTGCCCCTTCCTGCCCTAACAGCAAGTACCAGGCCAGTCCCTTCCCCAGCAAATGCCAGGGGCTTCATGTGAAGAGGAACTGGCCACAAGGCTGAGGGGAGGAGGAGAAACTGTTTCTGCAGGAAGGACAGCAGTGCCTCCAGGCTCTTGGGCATCTTCACATGTTTCTAGATAAGGACAAGCTCAACTCTGGAGCCTCTGGTAGGCAGAAGAAAGGAGGCAGGGAGTATGGCCTGGGCTTCAGATACCGCTGTTCTGGATGGATCCACAGATGACGAAGGCAAGGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:27130912|27131227 hsa-miR-23a-5p 0 0 1
chr2:27130912|27131227 hsa-miR-23a-3p 0 0 1
chr2:27130912|27131227 hsa-miR-23b-5p 0 0 1
chr2:27130912|27131227 hsa-miR-23b-3p 0 0 1
chr2:27130912|27131227 hsa-miR-335-5p 0 0 1
chr2:27130912|27131227 hsa-miR-335-3p 0 0 1
chr2:27130912|27131227 hsa-miR-412-5p 0 0 1
chr2:27130912|27131227 hsa-miR-412-3p 0 0 1
chr2:27130912|27131227 hsa-miR-494-5p 0 0 1
chr2:27130912|27131227 hsa-miR-494-3p 0 0 1
chr2:27130912|27131227 hsa-miR-193b-5p 0 0 1
chr2:27130912|27131227 hsa-miR-193b-3p 0 0 1
chr2:27130912|27131227 hsa-miR-626 0 0 1
chr2:27130912|27131227 hsa-miR-637 0 0 1
chr2:27130912|27131227 hsa-miR-650 0 0 1
chr2:27130912|27131227 hsa-miR-1296-5p 0 0 1
chr2:27130912|27131227 hsa-miR-1296-3p 0 0 1
chr2:27130912|27131227 hsa-miR-298 0 0 1
chr2:27130912|27131227 hsa-miR-663b 0 0 1
chr2:27130912|27131227 hsa-miR-1256 0 0 1
chr2:27130912|27131227 hsa-miR-1258 0 0 1
chr2:27130912|27131227 hsa-miR-1225-5p 0 0 1
chr2:27130912|27131227 hsa-miR-525-5p 0 0 1
chr2:27130912|27131227 hsa-miR-331-3p 0 0 1
chr2:27130912|27131227 hsa-miR-520a-5p 0 0 1
chr2:27130912|27131227 hsa-miR-193a-3p 0 0 1
chr2:27130912|27131227 hsa-miR-7 0 0 1
chr2:27130912|27131227 hsa-miR-1254 0 0 1
chr2:27130912|27131227 hsa-miR-219-1-3p 0 0 1
chr2:27130912|27131227 hsa-miR-1913 1 0 0
chr2:27130912|27131227 hsa-miR-1976 1 0 0
chr2:27130912|27131227 hsa-miR-3141 1 0 0
chr2:27130912|27131227 hsa-miR-3154 1 0 0
chr2:27130912|27131227 hsa-miR-4298 1 0 0
chr2:27130912|27131227 hsa-miR-3911 1 0 0
chr2:27130912|27131227 hsa-miR-3916 1 0 0
chr2:27130912|27131227 hsa-miR-4463 1 0 0
chr2:27130912|27131227 hsa-miR-4641 1 0 0
chr2:27130912|27131227 hsa-miR-4688 1 0 0
chr2:27130912|27131227 hsa-miR-5090 1 0 0
chr2:27130912|27131227 hsa-miR-6085 1 0 0
chr2:27130912|27131227 hsa-miR-6133 1 0 0
chr2:27130912|27131227 hsa-miR-8089 1 0 0
chr2:27130912|27131227 hsa-miR-15a-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6747-3p 1 0 0
chr2:27130912|27131227 hsa-miR-671-5p 1 0 0
chr2:27130912|27131227 hsa-miR-212-5p 1 0 0
chr2:27130912|27131227 hsa-miR-7106-5p 1 0 0
chr2:27130912|27131227 hsa-miR-1972 1 0 0
chr2:27130912|27131227 hsa-miR-8071 1 0 0
chr2:27130912|27131227 hsa-miR-766-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6875-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6727-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6721-5p 1 0 0
chr2:27130912|27131227 hsa-miR-1915-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6805-5p 1 0 0
chr2:27130912|27131227 hsa-miR-1224-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6882-3p 1 0 0
chr2:27130912|27131227 hsa-miR-1226-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4793-5p 1 0 0
chr2:27130912|27131227 hsa-miR-1229-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6894-3p 1 0 0
chr2:27130912|27131227 hsa-miR-4640-5p 1 0 0
chr2:27130912|27131227 hsa-miR-7113-3p 1 0 0
chr2:27130912|27131227 hsa-miR-1228-5p 1 0 0
chr2:27130912|27131227 hsa-miR-296-3p 1 0 0
chr2:27130912|27131227 hsa-miR-4446-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4446-3p 1 0 0
chr2:27130912|27131227 hsa-miR-149-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6824-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4640-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6781-5p 1 0 0
chr2:27130912|27131227 hsa-miR-339-5p 1 0 0
chr2:27130912|27131227 hsa-miR-423-5p 1 0 0
chr2:27130912|27131227 hsa-miR-7106-3p 1 0 0
chr2:27130912|27131227 hsa-miR-4661-3p 1 0 0
chr2:27130912|27131227 hsa-miR-2355-3p 1 0 0
chr2:27130912|27131227 hsa-miR-4750-5p 1 0 0
chr2:27130912|27131227 hsa-miR-3173-5p 1 0 0
chr2:27130912|27131227 hsa-miR-5581-3p 1 0 0
chr2:27130912|27131227 hsa-miR-1207-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4763-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6865-5p 1 0 0
chr2:27130912|27131227 hsa-miR-5001-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6743-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6754-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6756-5p 1 0 0
chr2:27130912|27131227 hsa-miR-7107-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6779-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6797-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6879-5p 1 0 0
chr2:27130912|27131227 hsa-miR-7111-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4685-3p 1 0 0
chr2:27130912|27131227 hsa-miR-3620-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4728-5p 1 0 0
chr2:27130912|27131227 hsa-miR-5196-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6780b-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4632-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4726-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6735-5p 1 0 0
chr2:27130912|27131227 hsa-miR-4436b-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6791-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6891-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6785-5p 1 0 0
chr2:27130912|27131227 hsa-miR-10398-5p 1 0 0
chr2:27130912|27131227 hsa-miR-6893-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6801-3p 1 0 0
chr2:27130912|27131227 hsa-miR-4723-3p 1 0 0
chr2:27130912|27131227 hsa-miR-6876-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr2:27130912|27131227
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MEPLVGRRKEAGSMAWASDTAVLDGSTDDEGKV
Nucleotide Sequence CTGGAGCCTCTGGTAGGCAGAAGAAAGGAGGCAGGGAGTATGGCCTGGGCTTCAGATACCGCTGTTCTGGATGGATCCACAGATGACGAAGGCAAGGTT
CircID chr2:27130912|27131227
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MPGASCEEELATRLRGGGETVSAGRTAVPPGSWASSHVSR
Nucleotide Sequence ATGCCAGGGGCTTCATGTGAAGAGGAACTGGCCACAAGGCTGAGGGGAGGAGGAGAAACTGTTTCTGCAGGAAGGACAGCAGTGCCTCCAGGCTCTTGGGCATCTTCACATGTTTCTAGATAA
CircID chr2:27130912|27131227
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MFLQEGQQCLQALGHLHMFLDKDKLNSGASGRQKKGGREYGLGFRYRCSGWIHR
Nucleotide Sequence CTGTTTCTGCAGGAAGGACAGCAGTGCCTCCAGGCTCTTGGGCATCTTCACATGTTTCTAGATAAGGACAAGCTCAACTCTGGAGCCTCTGGTAGGCAGAAGAAAGGAGGCAGGGAGTATGGCCTGGGCTTCAGATACCGCTGTTCTGGATGGATCCACAGATGA
CircID chr2:27130912|27131227
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MWIHPEQRYLKPRPYSLPPFFCLPEAPELSLSLSRNM
Nucleotide Sequence CTGTGGATCCATCCAGAACAGCGGTATCTGAAGCCCAGGCCATACTCCCTGCCTCCTTTCTTCTGCCTACCAGAGGCTCCAGAGTTGAGCTTGTCCTTATCTAGAAACATGTGA
CircID chr2:27130912|27131227
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MPSSSVDPSRTAVSEAQAILPASFLLPTRGSRVELVLI
Nucleotide Sequence TTGCCTTCGTCATCTGTGGATCCATCCAGAACAGCGGTATCTGAAGCCCAGGCCATACTCCCTGCCTCCTTTCTTCTGCCTACCAGAGGCTCCAGAGTTGAGCTTGTCCTTATCTAG
CircID chr2:27130912|27131227
ORF Type ORF6
Protein Length 60
Nucleotide Length 180
Protein Sequence MPKSLEALLSFLQKQFLLLPSALWPVPLHMKPLAFAGEGTGLVLAVRAGRGKRKTWVVIW
Nucleotide Sequence ATGCCCAAGAGCCTGGAGGCACTGCTGTCCTTCCTGCAGAAACAGTTTCTCCTCCTCCCCTCAGCCTTGTGGCCAGTTCCTCTTCACATGAAGCCCCTGGCATTTGCTGGGGAAGGGACTGGCCTGGTACTTGCTGTTAGGGCAGGAAGGGGCAAAAGGAAGACTTGGGTAGTAATCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab