CircRNA Information

General Information
circRNA Basic Information
CircID chr2:27130923|27131084
Strand -
CircType exon
Host Gene ENSG00000138073.12;
Algorism CIRI2;
Sequence TACCCAAGTCTTCCTTTTGCCCCTTCCTGCCCTAACAGCAAGTACCAGGCCAGTCCCTTCCCCAGCAAATGCCAGGGGCTTCATGTGAAGAGGAACTGGCCACAAGGCTGAGGGGAGGAGGAGAAACTGTTTCTGCAGGAAGGACAGCAGTGCCTCCAGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:27130923|27131084 hsa-miR-23a-5p 0 0 1
chr2:27130923|27131084 hsa-miR-23a-3p 0 0 1
chr2:27130923|27131084 hsa-miR-23b-5p 0 0 1
chr2:27130923|27131084 hsa-miR-23b-3p 0 0 1
chr2:27130923|27131084 hsa-miR-412-5p 0 0 1
chr2:27130923|27131084 hsa-miR-412-3p 0 0 1
chr2:27130923|27131084 hsa-miR-193b-5p 0 0 1
chr2:27130923|27131084 hsa-miR-193b-3p 0 0 1
chr2:27130923|27131084 hsa-miR-626 0 0 1
chr2:27130923|27131084 hsa-miR-650 0 0 1
chr2:27130923|27131084 hsa-miR-1296-5p 0 0 1
chr2:27130923|27131084 hsa-miR-1296-3p 0 0 1
chr2:27130923|27131084 hsa-miR-298 0 0 1
chr2:27130923|27131084 hsa-miR-663b 0 0 1
chr2:27130923|27131084 hsa-miR-1256 0 0 1
chr2:27130923|27131084 hsa-miR-1258 0 0 1
chr2:27130923|27131084 hsa-miR-1225-5p 0 0 1
chr2:27130923|27131084 hsa-miR-331-3p 0 0 1
chr2:27130923|27131084 hsa-miR-193a-3p 0 0 1
chr2:27130923|27131084 hsa-miR-7 0 0 1
chr2:27130923|27131084 hsa-miR-1254 0 0 1
chr2:27130923|27131084 hsa-miR-3141 1 0 0
chr2:27130923|27131084 hsa-miR-3154 1 0 0
chr2:27130923|27131084 hsa-miR-4298 1 0 0
chr2:27130923|27131084 hsa-miR-4270 1 0 0
chr2:27130923|27131084 hsa-miR-2392 1 0 0
chr2:27130923|27131084 hsa-miR-4688 1 0 0
chr2:27130923|27131084 hsa-miR-4736 1 0 0
chr2:27130923|27131084 hsa-miR-4739 1 0 0
chr2:27130923|27131084 hsa-miR-5090 1 0 0
chr2:27130923|27131084 hsa-miR-6085 1 0 0
chr2:27130923|27131084 hsa-miR-6133 1 0 0
chr2:27130923|27131084 hsa-miR-8089 1 0 0
chr2:27130923|27131084 hsa-miR-4433a-3p 1 0 0
chr2:27130923|27131084 hsa-miR-671-5p 1 0 0
chr2:27130923|27131084 hsa-miR-7106-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4722-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6727-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6721-5p 1 0 0
chr2:27130923|27131084 hsa-miR-1292-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6881-5p 1 0 0
chr2:27130923|27131084 hsa-miR-1226-5p 1 0 0
chr2:27130923|27131084 hsa-miR-1229-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4640-5p 1 0 0
chr2:27130923|27131084 hsa-miR-1228-5p 1 0 0
chr2:27130923|27131084 hsa-miR-296-3p 1 0 0
chr2:27130923|27131084 hsa-miR-4446-3p 1 0 0
chr2:27130923|27131084 hsa-miR-149-3p 1 0 0
chr2:27130923|27131084 hsa-miR-6824-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6781-5p 1 0 0
chr2:27130923|27131084 hsa-miR-7112-5p 1 0 0
chr2:27130923|27131084 hsa-miR-423-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4750-5p 1 0 0
chr2:27130923|27131084 hsa-miR-1207-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4763-3p 1 0 0
chr2:27130923|27131084 hsa-miR-6787-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6865-5p 1 0 0
chr2:27130923|27131084 hsa-miR-5001-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6743-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6754-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6756-5p 1 0 0
chr2:27130923|27131084 hsa-miR-7107-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6779-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6797-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6879-5p 1 0 0
chr2:27130923|27131084 hsa-miR-7111-5p 1 0 0
chr2:27130923|27131084 hsa-miR-3620-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4728-5p 1 0 0
chr2:27130923|27131084 hsa-miR-5196-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6780b-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4632-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4726-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6735-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6883-5p 1 0 0
chr2:27130923|27131084 hsa-miR-4436b-3p 1 0 0
chr2:27130923|27131084 hsa-miR-4747-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6891-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6785-5p 1 0 0
chr2:27130923|27131084 hsa-miR-6876-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:27130923|27131084
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MPGASCEEELATRLRGGGETVSAGRTAVPPG
Nucleotide Sequence ATGCCAGGGGCTTCATGTGAAGAGGAACTGGCCACAAGGCTGAGGGGAGGAGGAGAAACTGTTTCTGCAGGAAGGACAGCAGTGCCTCCAGGC
CircID chr2:27130923|27131084
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MEALLSFLQKQFLLLPSALWPVPLHMKPLAFAGEGTGLVLAVRAGRGKRKTWV
Nucleotide Sequence CTGGAGGCACTGCTGTCCTTCCTGCAGAAACAGTTTCTCCTCCTCCCCTCAGCCTTGTGGCCAGTTCCTCTTCACATGAAGCCCCTGGCATTTGCTGGGGAAGGGACTGGCCTGGTACTTGCTGTTAGGGCAGGAAGGGGCAAAAGGAAGACTTGGGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab