CircRNA Information

General Information
circRNA Basic Information
CircID chr2:27131748|27132070
Strand +
CircType exon
Host Gene ENSG00000138073.12;
Algorism CIRI2;
Sequence CTTCCTAGGCCTGGGCACAGTCACTGGCTCTGTTGCCATCTACATAGCTTTCTCTCTCCAGGTAATGGGTGGAGGTTGGCATGGCCCTGTGGGTGGACTGTAGGCCTGTCTCTACCCTGAGTTTGCAGGAAGGAGTCTGGCCCATCCTATCGAGGGAAATCCTGGGGGTGGGGAACATGCTTTCCAGAAAGAGAGTTCCCAGCTAGGCCTTTCCTCACTGGTATTCCTTCTGCCCACAGTGCCTCTACTACGTGAGGGAGGCCCATGGCATTGTGGTGACGGATGTGGCCTTTCTACCTGAGAAGGGTCGTGGTCCAGAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:27131748|27132070 hsa-miR-197-5p 0 0 1
chr2:27131748|27132070 hsa-miR-197-3p 0 0 1
chr2:27131748|27132070 hsa-miR-134-5p 0 0 1
chr2:27131748|27132070 hsa-miR-134-3p 0 0 1
chr2:27131748|27132070 hsa-miR-185-5p 0 0 1
chr2:27131748|27132070 hsa-miR-185-3p 0 0 1
chr2:27131748|27132070 hsa-miR-422a 0 0 1
chr2:27131748|27132070 hsa-miR-510-5p 0 0 1
chr2:27131748|27132070 hsa-miR-510-3p 0 0 1
chr2:27131748|27132070 hsa-miR-575 0 0 1
chr2:27131748|27132070 hsa-miR-619-5p 0 0 1
chr2:27131748|27132070 hsa-miR-619-3p 0 0 1
chr2:27131748|27132070 hsa-miR-411-5p 0 0 1
chr2:27131748|27132070 hsa-miR-411-3p 0 0 1
chr2:27131748|27132070 hsa-miR-660-5p 0 0 1
chr2:27131748|27132070 hsa-miR-660-3p 0 0 1
chr2:27131748|27132070 hsa-miR-298 0 0 1
chr2:27131748|27132070 hsa-miR-943 0 0 1
chr2:27131748|27132070 hsa-miR-1299 0 0 1
chr2:27131748|27132070 hsa-miR-1265 0 0 1
chr2:27131748|27132070 hsa-miR-1266-5p 0 0 1
chr2:27131748|27132070 hsa-miR-1266-3p 0 0 1
chr2:27131748|27132070 hsa-miR-1292-5p 0 0 1
chr2:27131748|27132070 hsa-miR-1292-3p 0 0 1
chr2:27131748|27132070 hsa-miR-1252-5p 0 0 1
chr2:27131748|27132070 hsa-miR-1252-3p 0 0 1
chr2:27131748|27132070 hsa-miR-139-5p 0 1 1
chr2:27131748|27132070 hsa-miR-361-3p 0 1 1
chr2:27131748|27132070 hsa-miR-875-3p 0 0 1
chr2:27131748|27132070 hsa-miR-885-5p 0 0 1
chr2:27131748|27132070 hsa-miR-455-3p 0 0 1
chr2:27131748|27132070 hsa-miR-876-5p 0 0 1
chr2:27131748|27132070 hsa-miR-220b 0 0 1
chr2:27131748|27132070 hsa-miR-642 0 0 1
chr2:27131748|27132070 hsa-miR-220c 0 0 1
chr2:27131748|27132070 hsa-miR-378 0 0 1
chr2:27131748|27132070 hsa-miR-516b 0 0 1
chr2:27131748|27132070 hsa-miR-768-3p 0 0 1
chr2:27131748|27132070 hsa-miR-3125 0 1 0
chr2:27131748|27132070 hsa-miR-3132 1 1 0
chr2:27131748|27132070 hsa-miR-3153 0 1 0
chr2:27131748|27132070 hsa-miR-3175 1 1 0
chr2:27131748|27132070 hsa-miR-3197 1 0 0
chr2:27131748|27132070 hsa-miR-4306 0 1 0
chr2:27131748|27132070 hsa-miR-4318 0 1 0
chr2:27131748|27132070 hsa-miR-3916 0 1 0
chr2:27131748|27132070 hsa-miR-3978 0 1 0
chr2:27131748|27132070 hsa-miR-4644 0 1 0
chr2:27131748|27132070 hsa-miR-4688 1 0 0
chr2:27131748|27132070 hsa-miR-5190 1 1 0
chr2:27131748|27132070 hsa-miR-8085 0 1 0
chr2:27131748|27132070 hsa-miR-196a-3p 0 1 0
chr2:27131748|27132070 hsa-miR-6840-3p 0 1 0
chr2:27131748|27132070 hsa-miR-6854-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6873-5p 0 1 0
chr2:27131748|27132070 hsa-miR-4695-5p 1 0 0
chr2:27131748|27132070 hsa-miR-6796-3p 1 0 0
chr2:27131748|27132070 hsa-miR-4697-3p 1 1 0
chr2:27131748|27132070 hsa-miR-31-3p 0 1 0
chr2:27131748|27132070 hsa-miR-4753-3p 0 1 0
chr2:27131748|27132070 hsa-miR-2467-3p 1 0 0
chr2:27131748|27132070 hsa-miR-5008-5p 1 0 0
chr2:27131748|27132070 hsa-miR-1226-5p 1 0 0
chr2:27131748|27132070 hsa-miR-4650-3p 0 1 0
chr2:27131748|27132070 hsa-miR-4743-5p 1 0 0
chr2:27131748|27132070 hsa-miR-149-3p 1 0 0
chr2:27131748|27132070 hsa-miR-6824-5p 1 0 0
chr2:27131748|27132070 hsa-miR-6878-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6778-3p 0 1 0
chr2:27131748|27132070 hsa-miR-106b-3p 1 0 0
chr2:27131748|27132070 hsa-miR-6872-3p 0 1 0
chr2:27131748|27132070 hsa-miR-3074-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6508-3p 0 1 0
chr2:27131748|27132070 hsa-miR-5189-3p 0 1 0
chr2:27131748|27132070 hsa-miR-4524a-3p 0 1 0
chr2:27131748|27132070 hsa-miR-6768-3p 0 1 0
chr2:27131748|27132070 hsa-miR-6755-5p 0 1 0
chr2:27131748|27132070 hsa-miR-4717-5p 0 1 0
chr2:27131748|27132070 hsa-miR-4524b-3p 0 1 0
chr2:27131748|27132070 hsa-miR-4650-5p 0 1 0
chr2:27131748|27132070 hsa-miR-4716-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6743-5p 1 0 0
chr2:27131748|27132070 hsa-miR-6797-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6780b-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6794-5p 1 0 0
chr2:27131748|27132070 hsa-miR-6858-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6831-5p 1 0 0
chr2:27131748|27132070 hsa-miR-10396a-3p 1 0 0
chr2:27131748|27132070 hsa-miR-10396b-3p 1 0 0
chr2:27131748|27132070 hsa-miR-10398-3p 1 0 0
chr2:27131748|27132070 hsa-miR-6859-5p 1 0 0
chr2:27131748|27132070 hsa-miR-4676-5p 0 1 0
chr2:27131748|27132070 hsa-miR-6500-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:27131748|27132070
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGTVTGSVAIYIAFSLQVMGGGWHGPVGGL
Nucleotide Sequence CTGGGCACAGTCACTGGCTCTGTTGCCATCTACATAGCTTTCTCTCTCCAGGTAATGGGTGGAGGTTGGCATGGCCCTGTGGGTGGACTGTAG
CircID chr2:27131748|27132070
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MAHPIEGNPGGGEHAFQKESSQLGLSSLVFLLPTVPLLREGGPWHCGDGCGLST
Nucleotide Sequence CTGGCCCATCCTATCGAGGGAAATCCTGGGGGTGGGGAACATGCTTTCCAGAAAGAGAGTTCCCAGCTAGGCCTTTCCTCACTGGTATTCCTTCTGCCCACAGTGCCTCTACTACGTGAGGGAGGCCCATGGCATTGTGGTGACGGATGTGGCCTTTCTACCTGA
CircID chr2:27131748|27132070
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MALWVDCRPVSTLSLQEGVWPILSREILGVGNMLSRKRVPS
Nucleotide Sequence ATGGCCCTGTGGGTGGACTGTAGGCCTGTCTCTACCCTGAGTTTGCAGGAAGGAGTCTGGCCCATCCTATCGAGGGAAATCCTGGGGGTGGGGAACATGCTTTCCAGAAAGAGAGTTCCCAGCTAG
CircID chr2:27131748|27132070
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MGLPHVVEALWAEGIPVRKGLAGNSLSGKHVPHPQDFPR
Nucleotide Sequence ATGGGCCTCCCTCACGTAGTAGAGGCACTGTGGGCAGAAGGAATACCAGTGAGGAAAGGCCTAGCTGGGAACTCTCTTTCTGGAAAGCATGTTCCCCACCCCCAGGATTTCCCTCGATAG
CircID chr2:27131748|27132070
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MQTQGRDRPTVHPQGHANLHPLPGERKLCRWQQSQ
Nucleotide Sequence CTGCAAACTCAGGGTAGAGACAGGCCTACAGTCCACCCACAGGGCCATGCCAACCTCCACCCATTACCTGGAGAGAGAAAGCTATGTAGATGGCAACAGAGCCAGTGA
CircID chr2:27131748|27132070
ORF Type ORF6
Protein Length 65
Nucleotide Length 198
Protein Sequence MGTLFLESMFPTPRISLDRMGQTPSCKLRVETGLQSTHRAMPTSTHYLERESYVDGNRASDCAQA
Nucleotide Sequence CTGGGAACTCTCTTTCTGGAAAGCATGTTCCCCACCCCCAGGATTTCCCTCGATAGGATGGGCCAGACTCCTTCCTGCAAACTCAGGGTAGAGACAGGCCTACAGTCCACCCACAGGGCCATGCCAACCTCCACCCATTACCTGGAGAGAGAAAGCTATGTAGATGGCAACAGAGCCAGTGACTGTGCCCAGGCCTAG
CircID chr2:27131748|27132070
ORF Type ORF7
Protein Length 68
Nucleotide Length 207
Protein Sequence MDHDPSQVERPHPSPQCHGPPSRSRGTVGRRNTSEERPSWELSFWKACSPPPGFPSIGWARLLPANSG
Nucleotide Sequence CTGGACCACGACCCTTCTCAGGTAGAAAGGCCACATCCGTCACCACAATGCCATGGGCCTCCCTCACGTAGTAGAGGCACTGTGGGCAGAAGGAATACCAGTGAGGAAAGGCCTAGCTGGGAACTCTCTTTCTGGAAAGCATGTTCCCCACCCCCAGGATTTCCCTCGATAGGATGGGCCAGACTCCTTCCTGCAAACTCAGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab