CircRNA Information

General Information
circRNA Basic Information
CircID chr2:27366873|27367143
Strand -
CircType exon
Host Gene ENSG00000115211.14;
Algorism CIRI2;
Sequence TACCACCCGAAACCGCCGGCCCTCTGTCCAAGCCTCCTGAAGAATTCGTGATACCAGAGATGAGCTAGAGTGAATGAAGAGGAGGATTCAGTTATAAATGTCAGTAACTGATGACTAACTTATTCCCAAAGGCAAGTGGGTAGTCCCTTCTTCAGATCATTCCAACTCCCAATCTGCTCAGTCACAAGGTCTGGACCATACCATCCATATACCAGGATCACATCTCCATTACTGATCTTCTGGTAAGCAAAGCGTGAAATTGCCTGAGCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:27366873|27367143 hsa-miR-198 0 0 1
chr2:27366873|27367143 hsa-miR-134-5p 0 0 1
chr2:27366873|27367143 hsa-miR-134-3p 0 0 1
chr2:27366873|27367143 hsa-miR-206 0 0 1
chr2:27366873|27367143 hsa-miR-326 0 0 1
chr2:27366873|27367143 hsa-miR-571 0 1 1
chr2:27366873|27367143 hsa-miR-613 0 0 1
chr2:27366873|27367143 hsa-miR-620 0 0 1
chr2:27366873|27367143 hsa-miR-758-5p 0 0 1
chr2:27366873|27367143 hsa-miR-758-3p 0 0 1
chr2:27366873|27367143 hsa-miR-1298-5p 0 0 1
chr2:27366873|27367143 hsa-miR-1298-3p 0 0 1
chr2:27366873|27367143 hsa-miR-935 0 0 1
chr2:27366873|27367143 hsa-miR-1293 1 0 1
chr2:27366873|27367143 hsa-miR-1246 0 0 1
chr2:27366873|27367143 hsa-miR-1251-5p 0 0 1
chr2:27366873|27367143 hsa-miR-1251-3p 0 0 1
chr2:27366873|27367143 hsa-miR-1270 0 0 1
chr2:27366873|27367143 hsa-miR-576-3p 0 0 1
chr2:27366873|27367143 hsa-miR-330-5p 0 0 1
chr2:27366873|27367143 hsa-miR-1 0 0 1
chr2:27366873|27367143 hsa-miR-184 1 0 0
chr2:27366873|27367143 hsa-miR-608 1 0 0
chr2:27366873|27367143 hsa-miR-612 1 0 0
chr2:27366873|27367143 hsa-miR-637 1 0 0
chr2:27366873|27367143 hsa-miR-638 1 0 0
chr2:27366873|27367143 hsa-miR-762 1 0 0
chr2:27366873|27367143 hsa-miR-892b 1 0 0
chr2:27366873|27367143 hsa-miR-665 1 0 0
chr2:27366873|27367143 hsa-miR-2861 1 0 0
chr2:27366873|27367143 hsa-miR-3138 1 0 0
chr2:27366873|27367143 hsa-miR-3141 1 0 0
chr2:27366873|27367143 hsa-miR-1193 1 1 0
chr2:27366873|27367143 hsa-miR-3185 0 1 0
chr2:27366873|27367143 hsa-miR-3188 0 1 0
chr2:27366873|27367143 hsa-miR-3196 1 0 0
chr2:27366873|27367143 hsa-miR-4298 1 0 0
chr2:27366873|27367143 hsa-miR-3621 1 0 0
chr2:27366873|27367143 hsa-miR-4439 0 1 0
chr2:27366873|27367143 hsa-miR-4464 0 1 0
chr2:27366873|27367143 hsa-miR-4478 1 0 0
chr2:27366873|27367143 hsa-miR-4488 1 0 0
chr2:27366873|27367143 hsa-miR-4498 1 0 0
chr2:27366873|27367143 hsa-miR-4499 1 0 0
chr2:27366873|27367143 hsa-miR-4513 1 0 0
chr2:27366873|27367143 hsa-miR-4525 1 0 0
chr2:27366873|27367143 hsa-miR-4533 1 0 0
chr2:27366873|27367143 hsa-miR-1587 1 0 0
chr2:27366873|27367143 hsa-miR-4538 1 0 0
chr2:27366873|27367143 hsa-miR-4656 1 0 0
chr2:27366873|27367143 hsa-miR-4721 1 0 0
chr2:27366873|27367143 hsa-miR-4741 1 0 0
chr2:27366873|27367143 hsa-miR-5090 1 0 0
chr2:27366873|27367143 hsa-miR-5193 0 1 0
chr2:27366873|27367143 hsa-miR-6125 1 0 0
chr2:27366873|27367143 hsa-miR-6860 1 0 0
chr2:27366873|27367143 hsa-miR-8082 1 0 0
chr2:27366873|27367143 hsa-miR-138-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6734-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6854-5p 0 1 0
chr2:27366873|27367143 hsa-miR-6515-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6089 1 0 0
chr2:27366873|27367143 hsa-miR-6757-5p 1 0 0
chr2:27366873|27367143 hsa-miR-4695-5p 1 1 0
chr2:27366873|27367143 hsa-miR-6759-5p 1 0 0
chr2:27366873|27367143 hsa-miR-432-5p 1 0 0
chr2:27366873|27367143 hsa-miR-7108-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6871-5p 1 1 0
chr2:27366873|27367143 hsa-miR-3190-3p 1 0 0
chr2:27366873|27367143 hsa-miR-6805-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6798-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6782-5p 1 0 0
chr2:27366873|27367143 hsa-miR-3934-3p 0 1 0
chr2:27366873|27367143 hsa-miR-6835-5p 1 0 0
chr2:27366873|27367143 hsa-miR-5187-3p 0 1 0
chr2:27366873|27367143 hsa-miR-885-3p 1 0 0
chr2:27366873|27367143 hsa-miR-6771-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6847-5p 1 1 0
chr2:27366873|27367143 hsa-miR-4446-3p 1 0 0
chr2:27366873|27367143 hsa-miR-3162-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6781-5p 1 1 0
chr2:27366873|27367143 hsa-miR-6877-5p 1 0 0
chr2:27366873|27367143 hsa-miR-4774-5p 0 1 0
chr2:27366873|27367143 hsa-miR-3140-3p 0 1 0
chr2:27366873|27367143 hsa-miR-6857-3p 1 0 0
chr2:27366873|27367143 hsa-miR-4520-2-3p 0 1 0
chr2:27366873|27367143 hsa-miR-5001-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6726-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6803-5p 1 0 0
chr2:27366873|27367143 hsa-miR-1249-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6751-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6774-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6780a-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6788-5p 1 0 0
chr2:27366873|27367143 hsa-miR-3620-5p 1 0 0
chr2:27366873|27367143 hsa-miR-10526-3p 1 0 0
chr2:27366873|27367143 hsa-miR-4745-3p 1 0 0
chr2:27366873|27367143 hsa-miR-6735-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6846-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6848-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6858-5p 1 0 0
chr2:27366873|27367143 hsa-miR-3187-5p 1 0 0
chr2:27366873|27367143 hsa-miR-30c-1-3p 1 0 0
chr2:27366873|27367143 hsa-miR-4646-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6766-5p 1 0 0
chr2:27366873|27367143 hsa-miR-6785-5p 1 0 0
chr2:27366873|27367143 hsa-miR-3689d 0 1 0
chr2:27366873|27367143 hsa-miR-550a-5p 1 0 0
chr2:27366873|27367143 hsa-miR-3136-5p 1 1 0
chr2:27366873|27367143 hsa-miR-549a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:27366873|27367143
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLSHKVWTIPSIYQDHISITDLLVSKA
Nucleotide Sequence CTGCTCAGTCACAAGGTCTGGACCATACCATCCATATACCAGGATCACATCTCCATTACTGATCTTCTGGTAAGCAAAGCGTGA
CircID chr2:27366873|27367143
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MVYGWYGPDLVTEQIGSWNDLKKGLPTCLWE
Nucleotide Sequence CTGGTATATGGATGGTATGGTCCAGACCTTGTGACTGAGCAGATTGGGAGTTGGAATGATCTGAAGAAGGGACTACCCACTTGCCTTTGGGAATAA
CircID chr2:27366873|27367143
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MTFITESSSSFTLAHLWYHEFFRRLGQRAGGFGW
Nucleotide Sequence CTGACATTTATAACTGAATCCTCCTCTTCATTCACTCTAGCTCATCTCTGGTATCACGAATTCTTCAGGAGGCTTGGACAGAGGGCCGGCGGTTTCGGGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab