CircRNA Information

General Information
circRNA Basic Information
CircID chr2:27443511|27444061
Strand +
CircType exon
Host Gene ENSG00000157992.11;
Algorism CIRI2;
Sequence CTGTCCTAAACCCAACTTCTCTGTGATGCCCGGATTTCTTGATTTTGATCCAGTAGCTGCTCATTTTCCTGCCTTTTACATTTAGGAGATTCAAGCTCTGTCATTTCCTCTAGCTGCCCCTGAAGTCCGTCCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:27443511|27444061 hsa-miR-184 0 0 1
chr2:27443511|27444061 hsa-miR-629-5p 0 0 1
chr2:27443511|27444061 hsa-miR-629-3p 0 0 1
chr2:27443511|27444061 hsa-miR-646 0 0 1
chr2:27443511|27444061 hsa-miR-651-5p 0 0 1
chr2:27443511|27444061 hsa-miR-651-3p 0 0 1
chr2:27443511|27444061 hsa-miR-877-5p 0 0 1
chr2:27443511|27444061 hsa-miR-877-3p 0 0 1
chr2:27443511|27444061 hsa-miR-940 0 0 1
chr2:27443511|27444061 hsa-miR-1243 0 1 1
chr2:27443511|27444061 hsa-miR-1197 0 0 1
chr2:27443511|27444061 hsa-miR-486-3p 1 1 1
chr2:27443511|27444061 hsa-miR-422a 1 0 0
chr2:27443511|27444061 hsa-miR-638 1 0 0
chr2:27443511|27444061 hsa-miR-3125 0 1 0
chr2:27443511|27444061 hsa-miR-3141 1 0 0
chr2:27443511|27444061 hsa-miR-3196 1 0 0
chr2:27443511|27444061 hsa-miR-4259 0 1 0
chr2:27443511|27444061 hsa-miR-3662 0 1 0
chr2:27443511|27444061 hsa-miR-3916 0 1 0
chr2:27443511|27444061 hsa-miR-3945 1 0 0
chr2:27443511|27444061 hsa-miR-4476 1 0 0
chr2:27443511|27444061 hsa-miR-4484 0 1 0
chr2:27443511|27444061 hsa-miR-2392 1 0 0
chr2:27443511|27444061 hsa-miR-3960 1 0 0
chr2:27443511|27444061 hsa-miR-4688 1 1 0
chr2:27443511|27444061 hsa-miR-4739 1 0 0
chr2:27443511|27444061 hsa-miR-5090 1 0 0
chr2:27443511|27444061 hsa-miR-5093 0 1 0
chr2:27443511|27444061 hsa-miR-5703 1 0 0
chr2:27443511|27444061 hsa-miR-6076 1 0 0
chr2:27443511|27444061 hsa-miR-8063 1 1 0
chr2:27443511|27444061 hsa-miR-12124 0 1 0
chr2:27443511|27444061 hsa-miR-12128 1 0 0
chr2:27443511|27444061 hsa-miR-6089 1 0 0
chr2:27443511|27444061 hsa-miR-6873-5p 1 1 0
chr2:27443511|27444061 hsa-miR-6727-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6798-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6760-5p 1 0 0
chr2:27443511|27444061 hsa-miR-92b-5p 1 0 0
chr2:27443511|27444061 hsa-miR-149-3p 1 0 0
chr2:27443511|27444061 hsa-miR-6781-5p 1 0 0
chr2:27443511|27444061 hsa-miR-5584-5p 0 1 0
chr2:27443511|27444061 hsa-miR-7112-5p 1 0 0
chr2:27443511|27444061 hsa-miR-423-5p 1 0 0
chr2:27443511|27444061 hsa-miR-7112-3p 1 1 0
chr2:27443511|27444061 hsa-miR-513a-5p 1 0 0
chr2:27443511|27444061 hsa-miR-4763-3p 1 0 0
chr2:27443511|27444061 hsa-miR-6816-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6775-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6743-5p 1 1 0
chr2:27443511|27444061 hsa-miR-6808-5p 1 1 0
chr2:27443511|27444061 hsa-miR-5189-5p 1 0 0
chr2:27443511|27444061 hsa-miR-328-5p 1 0 0
chr2:27443511|27444061 hsa-miR-4632-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6738-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6795-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6887-5p 1 0 0
chr2:27443511|27444061 hsa-miR-4436b-3p 0 1 0
chr2:27443511|27444061 hsa-miR-4723-5p 1 0 0
chr2:27443511|27444061 hsa-miR-939-5p 1 0 0
chr2:27443511|27444061 hsa-miR-365a-5p 0 1 0
chr2:27443511|27444061 hsa-miR-365b-5p 0 1 0
chr2:27443511|27444061 hsa-miR-3679-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6891-5p 1 0 0
chr2:27443511|27444061 hsa-miR-6529-5p 1 0 0
chr2:27443511|27444061 hsa-miR-137-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:27443511|27444061
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MTELESPKCKRQENEQLLDQNQEIRASQRSWV
Nucleotide Sequence ATGACAGAGCTTGAATCTCCTAAATGTAAAAGGCAGGAAAATGAGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAGAGAAGTTGGGTTTAG
CircID chr2:27443511|27444061
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MNLLNVKGRKMSSYWIKIKKSGHHREVGFRT
Nucleotide Sequence TTGAATCTCCTAAATGTAAAAGGCAGGAAAATGAGCAGCTACTGGATCAAAATCAAGAAATCCGGGCATCACAGAGAAGTTGGGTTTAGGACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab