CircRNA Information

General Information
circRNA Basic Information
CircID chr2:28165328|28165488
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATTTTCTCTAAGACATACTCCAGATTTTTAAACTTGGCATGCAAAATGACCTTAACAACTTGGCTACCCAACTTAGTTTTCCAGCTTCACCTCTTGCATCTGCTGTTTTTGCATTCAGATATCAAGCTCCCCGAACCAACCATACTTTATACCTCCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:28165328|28165488 hsa-miR-382-5p 0 0 1
chr2:28165328|28165488 hsa-miR-382-3p 0 0 1
chr2:28165328|28165488 hsa-miR-340-5p 0 0 1
chr2:28165328|28165488 hsa-miR-340-3p 0 0 1
chr2:28165328|28165488 hsa-miR-202-5p 0 0 1
chr2:28165328|28165488 hsa-miR-202-3p 0 0 1
chr2:28165328|28165488 hsa-miR-507 0 0 1
chr2:28165328|28165488 hsa-miR-557 0 0 1
chr2:28165328|28165488 hsa-miR-559 0 0 1
chr2:28165328|28165488 hsa-miR-584-5p 0 0 1
chr2:28165328|28165488 hsa-miR-584-3p 0 0 1
chr2:28165328|28165488 hsa-miR-659-5p 0 0 1
chr2:28165328|28165488 hsa-miR-659-3p 0 0 1
chr2:28165328|28165488 hsa-miR-920 1 0 1
chr2:28165328|28165488 hsa-miR-922 0 0 1
chr2:28165328|28165488 hsa-miR-939-5p 0 0 1
chr2:28165328|28165488 hsa-miR-939-3p 0 0 1
chr2:28165328|28165488 hsa-miR-548j-5p 0 0 1
chr2:28165328|28165488 hsa-miR-548j-3p 0 0 1
chr2:28165328|28165488 hsa-miR-548k 0 0 1
chr2:28165328|28165488 hsa-miR-548l 0 0 1
chr2:28165328|28165488 hsa-miR-1303 0 0 1
chr2:28165328|28165488 hsa-miR-127-5p 0 0 1
chr2:28165328|28165488 hsa-miR-542-5p 0 0 1
chr2:28165328|28165488 hsa-miR-142-5p 0 0 1
chr2:28165328|28165488 hsa-miR-1225-5p 0 0 1
chr2:28165328|28165488 hsa-miR-654-3p 0 0 1
chr2:28165328|28165488 hsa-miR-875-3p 0 1 1
chr2:28165328|28165488 hsa-miR-548b-5p 0 0 1
chr2:28165328|28165488 hsa-miR-548d-5p 0 0 1
chr2:28165328|28165488 hsa-miR-450b-5p 0 0 1
chr2:28165328|28165488 hsa-miR-548c-3p 0 0 1
chr2:28165328|28165488 hsa-miR-548c-5p 0 0 1
chr2:28165328|28165488 hsa-miR-548a-5p 0 0 1
chr2:28165328|28165488 hsa-miR-548i 0 0 1
chr2:28165328|28165488 hsa-miR-516b 0 0 1
chr2:28165328|28165488 hsa-miR-548h 0 0 1
chr2:28165328|28165488 hsa-miR-608 1 0 0
chr2:28165328|28165488 hsa-miR-3147 1 0 0
chr2:28165328|28165488 hsa-miR-4259 1 1 0
chr2:28165328|28165488 hsa-miR-4458 1 0 0
chr2:28165328|28165488 hsa-miR-3689c 1 0 0
chr2:28165328|28165488 hsa-miR-4510 1 0 0
chr2:28165328|28165488 hsa-miR-4658 1 0 0
chr2:28165328|28165488 hsa-miR-4689 1 1 0
chr2:28165328|28165488 hsa-miR-4748 1 0 0
chr2:28165328|28165488 hsa-miR-5194 1 0 0
chr2:28165328|28165488 hsa-miR-6086 1 0 0
chr2:28165328|28165488 hsa-miR-6088 1 0 0
chr2:28165328|28165488 hsa-miR-6090 1 0 0
chr2:28165328|28165488 hsa-miR-6127 1 0 0
chr2:28165328|28165488 hsa-miR-6165 1 0 0
chr2:28165328|28165488 hsa-miR-12115 1 0 0
chr2:28165328|28165488 hsa-miR-92a-1-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6734-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6765-5p 1 0 0
chr2:28165328|28165488 hsa-miR-3150a-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6825-5p 1 1 0
chr2:28165328|28165488 hsa-miR-6799-5p 1 0 0
chr2:28165328|28165488 hsa-miR-766-5p 1 0 0
chr2:28165328|28165488 hsa-miR-7851-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6089 1 0 0
chr2:28165328|28165488 hsa-miR-4695-5p 1 0 0
chr2:28165328|28165488 hsa-miR-4722-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6727-5p 1 0 0
chr2:28165328|28165488 hsa-miR-8069 1 0 0
chr2:28165328|28165488 hsa-miR-432-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6772-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6732-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6827-5p 1 0 0
chr2:28165328|28165488 hsa-miR-1224-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6782-5p 1 0 0
chr2:28165328|28165488 hsa-miR-3150b-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6835-5p 1 1 0
chr2:28165328|28165488 hsa-miR-1229-5p 1 0 0
chr2:28165328|28165488 hsa-let-7b-5p 1 0 0
chr2:28165328|28165488 hsa-miR-149-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6824-5p 1 0 0
chr2:28165328|28165488 hsa-let-7c-5p 1 0 0
chr2:28165328|28165488 hsa-miR-431-3p 0 1 0
chr2:28165328|28165488 hsa-miR-3689b-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6812-5p 1 0 0
chr2:28165328|28165488 hsa-miR-1343-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6726-5p 1 1 0
chr2:28165328|28165488 hsa-miR-6819-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6851-5p 1 0 0
chr2:28165328|28165488 hsa-miR-11181-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6763-5p 1 0 0
chr2:28165328|28165488 hsa-miR-328-5p 1 0 0
chr2:28165328|28165488 hsa-miR-3689a-3p 1 0 0
chr2:28165328|28165488 hsa-miR-6777-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6846-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6858-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6889-5p 1 1 0
chr2:28165328|28165488 hsa-miR-6885-5p 1 0 0
chr2:28165328|28165488 hsa-miR-4758-5p 1 0 0
chr2:28165328|28165488 hsa-miR-3619-5p 1 0 0
chr2:28165328|28165488 hsa-miR-6838-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:28165328|28165488
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MQNDLNNLATQLSFPASPLASAVFAFRYQAPRTNHTLYLL
Nucleotide Sequence ATGCAAAATGACCTTAACAACTTGGCTACCCAACTTAGTTTTCCAGCTTCACCTCTTGCATCTGCTGTTTTTGCATTCAGATATCAAGCTCCCCGAACCAACCATACTTTATACCTCCTC
CircID chr2:28165328|28165488
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MACKMTLTTWLPNLVFQLHLLHLLFLHSDIKLPEPTILYTSS
Nucleotide Sequence TTGGCATGCAAAATGACCTTAACAACTTGGCTACCCAACTTAGTTTTCCAGCTTCACCTCTTGCATCTGCTGTTTTTGCATTCAGATATCAAGCTCCCCGAACCAACCATACTTTATACCTCCTCA
CircID chr2:28165328|28165488
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MNAKTADARGEAGKLSWVAKLLRSFCMPSLKIWSMS
Nucleotide Sequence CTGAATGCAAAAACAGCAGATGCAAGAGGTGAAGCTGGAAAACTAAGTTGGGTAGCCAAGTTGTTAAGGTCATTTTGCATGCCAAGTTTAAAAATCTGGAGTATGTCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab