CircRNA Information

General Information
circRNA Basic Information
CircID chr2:28636628|28636878
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence TAAGGAATACCATACAGGTCTGACCGCATCTGTGGCTTTAAACAAAAATCAAGCAGGGTGATGTGACACAGAGTAATGGCTGGGAAGAGGGAGGCCTCACTGAAGAAGTGACAGCTGAACAAACTTCAACAACATACAATAATATCTATAAAGTTCAAAAGCAAGCAGCTTGGCATATGGGGTTAGACGTCAGCATGATGGTGTAGAGACTCACTGGGGGATGAATAGTCCTGGAAGAAGGTGGAAAGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:28636628|28636878 hsa-miR-375-5p 0 0 1
chr2:28636628|28636878 hsa-miR-375-3p 0 0 1
chr2:28636628|28636878 hsa-miR-567 -4 0 1
chr2:28636628|28636878 hsa-miR-573 -6 0 1
chr2:28636628|28636878 hsa-miR-592 -7 0 1
chr2:28636628|28636878 hsa-miR-597-5p 0 0 1
chr2:28636628|28636878 hsa-miR-597-3p 0 0 1
chr2:28636628|28636878 hsa-miR-627-5p 0 0 1
chr2:28636628|28636878 hsa-miR-627-3p 0 0 1
chr2:28636628|28636878 hsa-miR-653-5p 0 0 1
chr2:28636628|28636878 hsa-miR-653-3p 0 0 1
chr2:28636628|28636878 hsa-miR-656-5p 0 0 1
chr2:28636628|28636878 hsa-miR-656-3p 0 0 1
chr2:28636628|28636878 hsa-miR-668-5p 0 0 1
chr2:28636628|28636878 hsa-miR-668-3p 0 0 1
chr2:28636628|28636878 hsa-miR-665 -9 0 1
chr2:28636628|28636878 hsa-miR-924 -11 0 1
chr2:28636628|28636878 hsa-miR-297 -5 0 1
chr2:28636628|28636878 hsa-miR-1236-5p 0 0 1
chr2:28636628|28636878 hsa-miR-1236-3p 0 0 1
chr2:28636628|28636878 hsa-miR-1248 -11 0 1
chr2:28636628|28636878 hsa-miR-361-3p -12 1 1
chr2:28636628|28636878 hsa-miR-1207-3p -3 0 1
chr2:28636628|28636878 hsa-miR-628-5p -5 0 1
chr2:28636628|28636878 hsa-miR-885-5p -12 0 1
chr2:28636628|28636878 hsa-miR-642 0 0 1
chr2:28636628|28636878 hsa-miR-664 0 0 1
chr2:28636628|28636878 hsa-miR-499-3p 0 0 1
chr2:28636628|28636878 hsa-miR-7977 -15 1 0
chr2:28636628|28636878 hsa-miR-103a-2-5p -12 1 0
chr2:28636628|28636878 hsa-miR-4700-3p -21 1 0
chr2:28636628|28636878 hsa-miR-215-3p -15 1 0
chr2:28636628|28636878 hsa-miR-4728-3p -16 1 0
chr2:28636628|28636878 hsa-miR-4697-3p -11 1 0
chr2:28636628|28636878 hsa-miR-6778-3p -13 1 0
chr2:28636628|28636878 hsa-miR-6773-3p -10 1 0
chr2:28636628|28636878 hsa-miR-4649-3p -20 1 0
chr2:28636628|28636878 hsa-miR-3664-5p -8 1 0
chr2:28636628|28636878 hsa-miR-6769b-3p -14 1 0
chr2:28636628|28636878 hsa-miR-103a-1-5p -12 1 0
chr2:28636628|28636878 hsa-miR-10393-3p -10 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr2:28636628|28636878
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MAYGVRRQHDGVETHWGMNSPGRRWKG
Nucleotide Sequence TTGGCATATGGGGTTAGACGTCAGCATGATGGTGTAGAGACTCACTGGGGGATGAATAGTCCTGGAAGAAGGTGGAAAGGG

CircID chr2:28636628|28636878
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MFSCHFFSEASLFPAITLCHITLLDFCLKPQMRSDLYGIP
Nucleotide Sequence TTGTTCAGCTGTCACTTCTTCAGTGAGGCCTCCCTCTTCCCAGCCATTACTCTGTGTCACATCACCCTGCTTGATTTTTGTTTAAAGCCACAGATGCGGTCAGACCTGTATGGTATTCCT

CircID chr2:28636628|28636878
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MYVVEVCSAVTSSVRPPSSQPLLCVTSPCLIFV
Nucleotide Sequence TTGTATGTTGTTGAAGTTTGTTCAGCTGTCACTTCTTCAGTGAGGCCTCCCTCTTCCCAGCCATTACTCTGTGTCACATCACCCTGCTTGATTTTTGTTTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites