CircRNA Information

General Information
circRNA Basic Information
CircID chr2:28924025|28924360
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGATACCAGCTACCACTCCCTCCTGCCGTCATCCAATGATCTCTGCCACCATCCACATTTCGTAAAGATTTCAGTGGCTTGAGGTCATTACTTCTAACATTACTCTAAATGAATTCCTTTCTTAGTGGTTTCCACACCCAGTGTCCAGGTTGATGGACACTCCTGACACTCTGATCTGTCAACTCCTTTCTCAAATGAACATGCCCCTCACTGTATTTCAGCCACAAACTCCTCACACCCTACGCATCTTATTACCACTTATTCTCCACAAGTGTACATCCTGCATAATATCCCAGGTGTAAGCATCTCATGATCCCTATCTTTCCAACTTACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:28924025|28924360 hsa-miR-122-5p 0 0 1
chr2:28924025|28924360 hsa-miR-122-3p 0 0 1
chr2:28924025|28924360 hsa-miR-143-5p 0 0 1
chr2:28924025|28924360 hsa-miR-143-3p 0 0 1
chr2:28924025|28924360 hsa-miR-382-5p 0 0 1
chr2:28924025|28924360 hsa-miR-382-3p 0 0 1
chr2:28924025|28924360 hsa-miR-383-5p 0 0 1
chr2:28924025|28924360 hsa-miR-383-3p 0 0 1
chr2:28924025|28924360 hsa-miR-539-5p 0 0 1
chr2:28924025|28924360 hsa-miR-539-3p 0 0 1
chr2:28924025|28924360 hsa-miR-579-5p 0 0 1
chr2:28924025|28924360 hsa-miR-579-3p 0 0 1
chr2:28924025|28924360 hsa-miR-580-5p 0 0 1
chr2:28924025|28924360 hsa-miR-580-3p 0 0 1
chr2:28924025|28924360 hsa-miR-609 0 0 1
chr2:28924025|28924360 hsa-miR-619-5p 0 0 1
chr2:28924025|28924360 hsa-miR-619-3p 0 0 1
chr2:28924025|28924360 hsa-miR-656-5p 0 0 1
chr2:28924025|28924360 hsa-miR-656-3p 0 0 1
chr2:28924025|28924360 hsa-miR-1206 0 0 1
chr2:28924025|28924360 hsa-miR-1286 0 0 1
chr2:28924025|28924360 hsa-miR-1294 1 0 1
chr2:28924025|28924360 hsa-miR-1303 0 0 1
chr2:28924025|28924360 hsa-miR-1255a 0 0 1
chr2:28924025|28924360 hsa-miR-1265 0 0 1
chr2:28924025|28924360 hsa-miR-490-3p 0 0 1
chr2:28924025|28924360 hsa-miR-423-5p 1 0 1
chr2:28924025|28924360 hsa-miR-409-3p 0 0 1
chr2:28924025|28924360 hsa-miR-491-3p 0 0 1
chr2:28924025|28924360 hsa-miR-1255b 0 0 1
chr2:28924025|28924360 hsa-miR-664 0 0 1
chr2:28924025|28924360 hsa-miR-1300 0 0 1
chr2:28924025|28924360 hsa-miR-219-1-3p 0 0 1
chr2:28924025|28924360 hsa-miR-571 1 1 0
chr2:28924025|28924360 hsa-miR-658 1 0 0
chr2:28924025|28924360 hsa-miR-921 1 0 0
chr2:28924025|28924360 hsa-miR-1183 1 0 0
chr2:28924025|28924360 hsa-miR-1293 0 1 0
chr2:28924025|28924360 hsa-miR-1299 1 0 0
chr2:28924025|28924360 hsa-miR-1268a 1 0 0
chr2:28924025|28924360 hsa-miR-1275 1 0 0
chr2:28924025|28924360 hsa-miR-3141 1 0 0
chr2:28924025|28924360 hsa-miR-3147 1 0 0
chr2:28924025|28924360 hsa-miR-3153 0 1 0
chr2:28924025|28924360 hsa-miR-3154 1 0 0
chr2:28924025|28924360 hsa-miR-3174 1 0 0
chr2:28924025|28924360 hsa-miR-3197 1 0 0
chr2:28924025|28924360 hsa-miR-4298 1 0 0
chr2:28924025|28924360 hsa-miR-4259 1 0 0
chr2:28924025|28924360 hsa-miR-4253 1 1 0
chr2:28924025|28924360 hsa-miR-3652 1 0 0
chr2:28924025|28924360 hsa-miR-3911 1 1 0
chr2:28924025|28924360 hsa-miR-3945 1 0 0
chr2:28924025|28924360 hsa-miR-1268b 1 0 0
chr2:28924025|28924360 hsa-miR-4430 1 0 0
chr2:28924025|28924360 hsa-miR-4455 0 1 0
chr2:28924025|28924360 hsa-miR-4476 1 0 0
chr2:28924025|28924360 hsa-miR-4491 0 1 0
chr2:28924025|28924360 hsa-miR-2392 1 0 0
chr2:28924025|28924360 hsa-miR-4510 1 1 0
chr2:28924025|28924360 hsa-miR-4525 1 0 0
chr2:28924025|28924360 hsa-miR-4533 1 0 0
chr2:28924025|28924360 hsa-miR-4647 1 0 0
chr2:28924025|28924360 hsa-miR-4651 1 0 0
chr2:28924025|28924360 hsa-miR-4657 0 1 0
chr2:28924025|28924360 hsa-miR-4688 1 0 0
chr2:28924025|28924360 hsa-miR-4689 1 0 0
chr2:28924025|28924360 hsa-miR-4706 1 0 0
chr2:28924025|28924360 hsa-miR-4710 1 0 0
chr2:28924025|28924360 hsa-miR-4730 0 1 0
chr2:28924025|28924360 hsa-miR-4736 1 0 0
chr2:28924025|28924360 hsa-miR-4739 1 0 0
chr2:28924025|28924360 hsa-miR-4779 1 1 0
chr2:28924025|28924360 hsa-miR-5087 1 0 0
chr2:28924025|28924360 hsa-miR-5194 1 1 0
chr2:28924025|28924360 hsa-miR-5572 1 0 0
chr2:28924025|28924360 hsa-miR-5698 1 0 0
chr2:28924025|28924360 hsa-miR-5739 1 0 0
chr2:28924025|28924360 hsa-miR-5787 1 0 0
chr2:28924025|28924360 hsa-miR-6085 1 0 0
chr2:28924025|28924360 hsa-miR-6086 1 0 0
chr2:28924025|28924360 hsa-miR-6090 1 0 0
chr2:28924025|28924360 hsa-miR-6127 1 1 0
chr2:28924025|28924360 hsa-miR-6129 1 1 0
chr2:28924025|28924360 hsa-miR-6130 1 1 0
chr2:28924025|28924360 hsa-miR-6133 1 1 0
chr2:28924025|28924360 hsa-miR-6165 1 0 0
chr2:28924025|28924360 hsa-miR-7150 1 0 0
chr2:28924025|28924360 hsa-miR-8075 1 0 0
chr2:28924025|28924360 hsa-miR-8085 1 0 0
chr2:28924025|28924360 hsa-miR-17-3p 1 0 0
chr2:28924025|28924360 hsa-miR-4433b-3p 1 1 0
chr2:28924025|28924360 hsa-miR-92a-2-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6734-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6747-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4433a-3p 1 0 0
chr2:28924025|28924360 hsa-miR-671-5p 1 0 0
chr2:28924025|28924360 hsa-miR-7106-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6894-5p 1 0 0
chr2:28924025|28924360 hsa-miR-219a-1-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6510-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6804-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6833-5p 1 1 0
chr2:28924025|28924360 hsa-miR-7851-3p 0 1 0
chr2:28924025|28924360 hsa-miR-7114-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6757-5p 1 0 0
chr2:28924025|28924360 hsa-miR-7847-3p 1 0 0
chr2:28924025|28924360 hsa-miR-4695-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6744-5p 1 1 0
chr2:28924025|28924360 hsa-miR-4653-3p 1 0 0
chr2:28924025|28924360 hsa-miR-4722-5p 1 1 0
chr2:28924025|28924360 hsa-miR-6730-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6820-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4474-3p 1 1 0
chr2:28924025|28924360 hsa-miR-3622b-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6759-5p 1 1 0
chr2:28924025|28924360 hsa-miR-197-5p 1 0 0
chr2:28924025|28924360 hsa-miR-7108-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6742-5p 1 0 0
chr2:28924025|28924360 hsa-miR-3151-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6772-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6732-5p 1 1 0
chr2:28924025|28924360 hsa-miR-3190-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6798-5p 1 0 0
chr2:28924025|28924360 hsa-miR-486-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6760-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6881-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6782-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6514-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6821-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6835-5p 1 0 0
chr2:28924025|28924360 hsa-miR-7109-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1226-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6853-5p 1 0 0
chr2:28924025|28924360 hsa-miR-204-3p 1 0 0
chr2:28924025|28924360 hsa-miR-1229-5p 1 0 0
chr2:28924025|28924360 hsa-miR-193b-5p 1 0 0
chr2:28924025|28924360 hsa-miR-3691-5p 0 1 0
chr2:28924025|28924360 hsa-miR-885-3p 1 0 0
chr2:28924025|28924360 hsa-let-7d-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6771-5p 1 0 0
chr2:28924025|28924360 hsa-let-7b-5p 1 0 0
chr2:28924025|28924360 hsa-miR-877-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4787-5p 1 0 0
chr2:28924025|28924360 hsa-miR-149-3p 1 0 0
chr2:28924025|28924360 hsa-miR-3616-3p 1 0 0
chr2:28924025|28924360 hsa-miR-3162-5p 1 0 0
chr2:28924025|28924360 hsa-miR-194-3p 1 0 0
chr2:28924025|28924360 hsa-let-7c-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1304-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1207-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4763-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6769b-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6778-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6787-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6812-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6816-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6865-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6870-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6775-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1343-5p 1 0 0
chr2:28924025|28924360 hsa-miR-5001-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6743-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6752-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6756-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6769a-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6803-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6813-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6819-5p 1 0 0
chr2:28924025|28924360 hsa-miR-7110-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1249-5p 1 1 0
chr2:28924025|28924360 hsa-miR-6722-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6751-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6763-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6797-5p 1 1 0
chr2:28924025|28924360 hsa-miR-6879-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4728-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6862-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1909-3p 1 0 0
chr2:28924025|28924360 hsa-miR-328-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4701-3p 1 0 0
chr2:28924025|28924360 hsa-miR-4745-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6738-5p 1 0 0
chr2:28924025|28924360 hsa-miR-675-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6777-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6795-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6858-5p 1 1 0
chr2:28924025|28924360 hsa-miR-6883-5p 1 1 0
chr2:28924025|28924360 hsa-miR-6889-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4436b-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6885-5p 1 0 0
chr2:28924025|28924360 hsa-miR-939-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4758-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4769-5p 1 0 0
chr2:28924025|28924360 hsa-miR-30c-1-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6758-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6856-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1914-3p 1 0 0
chr2:28924025|28924360 hsa-miR-6736-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6855-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4646-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6876-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6891-5p 1 0 0
chr2:28924025|28924360 hsa-miR-4472 1 0 0
chr2:28924025|28924360 hsa-miR-6785-5p 1 1 0
chr2:28924025|28924360 hsa-miR-3184-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6849-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6762-5p 1 0 0
chr2:28924025|28924360 hsa-miR-6529-5p 0 1 0
chr2:28924025|28924360 hsa-miR-6884-5p 1 0 0
chr2:28924025|28924360 hsa-miR-1255b-5p 1 0 0
chr2:28924025|28924360 hsa-miR-510-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:28924025|28924360
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MMDTPDTLICQLLSQMNMPLTVFQPQTPHTLRILLPLILHKCTSCIISQV
Nucleotide Sequence TTGATGGACACTCCTGACACTCTGATCTGTCAACTCCTTTCTCAAATGAACATGCCCCTCACTGTATTTCAGCCACAAACTCCTCACACCCTACGCATCTTATTACCACTTATTCTCCACAAGTGTACATCCTGCATAATATCCCAGGTGTAA
CircID chr2:28924025|28924360
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MYFSHKLLTPYASYYHLFSTSVHPA
Nucleotide Sequence CTGTATTTCAGCCACAAACTCCTCACACCCTACGCATCTTATTACCACTTATTCTCCACAAGTGTACATCCTGCATAA
CircID chr2:28924025|28924360
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MSTPFSNEHAPHCISATNSSHPTHLITTYSPQVYILHNIPGVSIS
Nucleotide Sequence CTGTCAACTCCTTTCTCAAATGAACATGCCCCTCACTGTATTTCAGCCACAAACTCCTCACACCCTACGCATCTTATTACCACTTATTCTCCACAAGTGTACATCCTGCATAATATCCCAGGTGTAAGCATCTCATGA
CircID chr2:28924025|28924360
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MWLKYSEGHVHLRKELTDQSVRSVHQPGHWVWKPLRKEFI
Nucleotide Sequence TTGTGGCTGAAATACAGTGAGGGGCATGTTCATTTGAGAAAGGAGTTGACAGATCAGAGTGTCAGGAGTGTCCATCAACCTGGACACTGGGTGTGGAAACCACTAAGAAAGGAATTCATTTAG
CircID chr2:28924025|28924360
ORF Type ORF5
Protein Length 25
Nucleotide Length 75
Protein Sequence MKSLRNVDGGRDHWMTAGGSGSWYL
Nucleotide Sequence CTGAAATCTTTACGAAATGTGGATGGTGGCAGAGATCATTGGATGACGGCAGGAGGGAGTGGTAGCTGGTATCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab