CircRNA Information

General Information
circRNA Basic Information
CircID chr2:33569515|33569704
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CGCGCTGGGTCCATTTTTGTCTATTTTTGTGCCTTTTTTTTTTTTTTTTTTTTGAGACAGAATTTTGCTCTTGTTGCCCAGGCTGGAATGCCATGGCGCGATCTCAGTTCACCACAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCGGCCTCCCCAGTAGCTAGGATTACAGGCATGCGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:33569515|33569704 hsa-miR-34b-5p 0 0 1
chr2:33569515|33569704 hsa-miR-34b-3p 0 0 1
chr2:33569515|33569704 hsa-miR-335-5p 0 0 1
chr2:33569515|33569704 hsa-miR-335-3p 0 0 1
chr2:33569515|33569704 hsa-miR-506-5p 0 0 1
chr2:33569515|33569704 hsa-miR-506-3p 0 0 1
chr2:33569515|33569704 hsa-miR-612 0 0 1
chr2:33569515|33569704 hsa-miR-661 1 0 1
chr2:33569515|33569704 hsa-miR-939-5p 0 0 1
chr2:33569515|33569704 hsa-miR-939-3p 0 0 1
chr2:33569515|33569704 hsa-miR-940 0 0 1
chr2:33569515|33569704 hsa-miR-1256 0 0 1
chr2:33569515|33569704 hsa-miR-548p 0 0 1
chr2:33569515|33569704 hsa-miR-1827 0 1 1
chr2:33569515|33569704 hsa-miR-490-3p 0 0 1
chr2:33569515|33569704 hsa-miR-371-5p 0 0 1
chr2:33569515|33569704 hsa-miR-124 0 0 1
chr2:33569515|33569704 hsa-miR-500 0 0 1
chr2:33569515|33569704 hsa-miR-1285 0 0 1
chr2:33569515|33569704 hsa-miR-608 1 0 0
chr2:33569515|33569704 hsa-miR-637 1 0 0
chr2:33569515|33569704 hsa-miR-1269a 1 0 0
chr2:33569515|33569704 hsa-miR-1268b 1 0 0
chr2:33569515|33569704 hsa-miR-3689c 1 1 0
chr2:33569515|33569704 hsa-miR-4651 1 0 0
chr2:33569515|33569704 hsa-miR-4688 1 0 0
chr2:33569515|33569704 hsa-miR-5787 1 0 0
chr2:33569515|33569704 hsa-miR-6086 0 1 0
chr2:33569515|33569704 hsa-miR-6134 0 1 0
chr2:33569515|33569704 hsa-miR-6860 1 0 0
chr2:33569515|33569704 hsa-miR-8089 1 1 0
chr2:33569515|33569704 hsa-miR-12114 1 1 0
chr2:33569515|33569704 hsa-miR-370-3p 1 0 0
chr2:33569515|33569704 hsa-miR-6861-5p 1 0 0
chr2:33569515|33569704 hsa-miR-7106-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6825-5p 1 1 0
chr2:33569515|33569704 hsa-miR-6894-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6720-5p 0 1 0
chr2:33569515|33569704 hsa-miR-6799-5p 1 0 0
chr2:33569515|33569704 hsa-miR-7851-3p 1 1 0
chr2:33569515|33569704 hsa-miR-6515-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6089 1 1 0
chr2:33569515|33569704 hsa-miR-3192-5p 1 1 0
chr2:33569515|33569704 hsa-miR-6880-5p 1 1 0
chr2:33569515|33569704 hsa-miR-7847-3p 0 1 0
chr2:33569515|33569704 hsa-miR-4655-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6849-3p 0 1 0
chr2:33569515|33569704 hsa-miR-6772-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6732-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6782-5p 1 0 0
chr2:33569515|33569704 hsa-miR-30b-3p 1 1 0
chr2:33569515|33569704 hsa-miR-7109-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6771-5p 1 0 0
chr2:33569515|33569704 hsa-miR-3614-5p 0 1 0
chr2:33569515|33569704 hsa-miR-6749-5p 1 0 0
chr2:33569515|33569704 hsa-miR-4787-5p 1 0 0
chr2:33569515|33569704 hsa-miR-149-3p 1 0 0
chr2:33569515|33569704 hsa-miR-6824-5p 1 0 0
chr2:33569515|33569704 hsa-miR-500a-5p 1 0 0
chr2:33569515|33569704 hsa-miR-3121-3p 0 1 0
chr2:33569515|33569704 hsa-miR-4778-5p 0 1 0
chr2:33569515|33569704 hsa-miR-1207-5p 1 0 0
chr2:33569515|33569704 hsa-miR-1233-5p 1 0 0
chr2:33569515|33569704 hsa-miR-1273h-5p 1 1 0
chr2:33569515|33569704 hsa-miR-3689b-3p 1 1 0
chr2:33569515|33569704 hsa-miR-4763-3p 1 0 0
chr2:33569515|33569704 hsa-miR-6769b-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6778-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6775-5p 1 0 0
chr2:33569515|33569704 hsa-miR-1343-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6726-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6737-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6752-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6754-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6803-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6819-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6842-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6851-5p 1 1 0
chr2:33569515|33569704 hsa-miR-7107-5p 0 1 0
chr2:33569515|33569704 hsa-miR-7110-5p 1 0 0
chr2:33569515|33569704 hsa-miR-11181-3p 1 0 0
chr2:33569515|33569704 hsa-miR-6751-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6763-5p 1 1 0
chr2:33569515|33569704 hsa-miR-6779-5p 1 1 0
chr2:33569515|33569704 hsa-miR-6788-5p 1 0 0
chr2:33569515|33569704 hsa-miR-7111-5p 1 0 0
chr2:33569515|33569704 hsa-miR-4728-5p 1 0 0
chr2:33569515|33569704 hsa-miR-5189-5p 0 1 0
chr2:33569515|33569704 hsa-miR-328-5p 1 0 0
chr2:33569515|33569704 hsa-miR-3689a-3p 1 1 0
chr2:33569515|33569704 hsa-miR-6848-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6883-5p 1 0 0
chr2:33569515|33569704 hsa-miR-3187-5p 0 1 0
chr2:33569515|33569704 hsa-miR-6831-5p 1 0 0
chr2:33569515|33569704 hsa-miR-1285-3p 0 1 0
chr2:33569515|33569704 hsa-miR-377-5p 0 1 0
chr2:33569515|33569704 hsa-miR-4700-5p 0 1 0
chr2:33569515|33569704 hsa-miR-4646-5p 1 0 0
chr2:33569515|33569704 hsa-miR-6785-5p 1 0 0
chr2:33569515|33569704 hsa-miR-4667-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:33569515|33569704
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRQNFALVAQAGMPWRDLSSPQPPPPRFK
Nucleotide Sequence TTGAGACAGAATTTTGCTCTTGTTGCCCAGGCTGGAATGCCATGGCGCGATCTCAGTTCACCACAACCTCCACCTCCCAGGTTCAAGTGA
CircID chr2:33569515|33569704
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MLLLPRLECHGAISVHHNLHLPGSSDSPASASPVARITGMRH
Nucleotide Sequence TTGCTCTTGTTGCCCAGGCTGGAATGCCATGGCGCGATCTCAGTTCACCACAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCGGCCTCCCCAGTAGCTAGGATTACAGGCATGCGCCAC
CircID chr2:33569515|33569704
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MCLFFFFFFETEFCSCCPGWNAMARSQFTTTSTSQVQVILLPRPPQ
Nucleotide Sequence TTGTGCCTTTTTTTTTTTTTTTTTTTTGAGACAGAATTTTGCTCTTGTTGCCCAGGCTGGAATGCCATGGCGCGATCTCAGTTCACCACAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCGGCCTCCCCAGTAG
CircID chr2:33569515|33569704
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MAFQPGQQEQNSVSKKKKKKRHKNRQKWTQR
Nucleotide Sequence ATGGCATTCCAGCCTGGGCAACAAGAGCAAAATTCTGTCTCAAAAAAAAAAAAAAAAAAAAGGCACAAAAATAGACAAAAATGGACCCAGCGC
CircID chr2:33569515|33569704
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MGNKSKILSQKKKKKKGTKIDKNGPSA
Nucleotide Sequence CTGGGCAACAAGAGCAAAATTCTGTCTCAAAAAAAAAAAAAAAAAAAAGGCACAAAAATAGACAAAAATGGACCCAGCGCG
CircID chr2:33569515|33569704
ORF Type ORF6
Protein Length 47
Nucleotide Length 144
Protein Sequence MGRPRQENHLNLGGGGCGELRSRHGIPAWATRAKFCLKKKKKKKAQK
Nucleotide Sequence CTGGGGAGGCCGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGTGGTGAACTGAGATCGCGCCATGGCATTCCAGCCTGGGCAACAAGAGCAAAATTCTGTCTCAAAAAAAAAAAAAAAAAAAAGGCACAAAAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab