CircRNA Information

General Information
circRNA Basic Information
CircID chr2:40139401|40177855
Strand -
CircType exon
Host Gene ENSG00000183023.18;
Algorism find_circ;CIRI2;DCC;
Sequence GAAGATCATTACCATTAGAATATTTGACCGTGAGGAATATGAGAAAGAGTGCAGTTTCTCCCTTGTGCTTGAGGAACCAAAATGGATAAGAAGAGGAATGAAAGGCCAACCTGTCTTCAGGAAGGTTCATGCTAGAGAACATCCGATTCTCTCTACTGTAATCACCATTGCAGACGAATATGATGACAAGCAGCCACTGACCAGCAAAGAGGAAGAGGAGAGGCGCATTGCAGAAATGGGGCGCCCCATCCTGGGAGAGCACACCAAGTTGGAAGTGATCATTGAAGAATCCTATGAATTCAAGAGTACTGTGGACAAACTCATTAAGAAGACAAACCTGGCCCTTGTGGTTGGGACTAACAGCTGGAGAGAACAGTTCATTGAAGCTATCACTGTCAGTGCTGGGGAAGATGATGACGACGATGAATGTGGGGAAGAGAAGCTGCCCTCCTGTTTCGATTACGTGATGCACTTTCTGACTGTGTTCTGGAAGGTCCTGTTTGCCTTCGTCCCCCCTACTGAATACTGGAATGGCTGGGCGTGTTTCATTGTCTCCATCCTCATGATTGGCCTACTGACAGCTTTCATTGGAGACCTGGCTTCCCACTTTGGCTGCACCATTGGCCTGAAAGATTCTGTGACTGCAGTCGTGTTCGTCGCACTTGGAACATCAGTGCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:40139401|40177855
ORF Type ORF1
Protein Length 194
Nucleotide Length 582
Protein Sequence MKGQPVFRKVHAREHPILSTVITIADEYDDKQPLTSKEEEERRIAEMGRPILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWREQFIEAITVSAGEDDDDDECGEEKLPSCFDYVMHFLTVFWKVLFAFVPPTEYWNGWACFIVSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVP
Nucleotide Sequence ATGAAAGGCCAACCTGTCTTCAGGAAGGTTCATGCTAGAGAACATCCGATTCTCTCTACTGTAATCACCATTGCAGACGAATATGATGACAAGCAGCCACTGACCAGCAAAGAGGAAGAGGAGAGGCGCATTGCAGAAATGGGGCGCCCCATCCTGGGAGAGCACACCAAGTTGGAAGTGATCATTGAAGAATCCTATGAATTCAAGAGTACTGTGGACAAACTCATTAAGAAGACAAACCTGGCCCTTGTGGTTGGGACTAACAGCTGGAGAGAACAGTTCATTGAAGCTATCACTGTCAGTGCTGGGGAAGATGATGACGACGATGAATGTGGGGAAGAGAAGCTGCCCTCCTGTTTCGATTACGTGATGCACTTTCTGACTGTGTTCTGGAAGGTCCTGTTTGCCTTCGTCCCCCCTACTGAATACTGGAATGGCTGGGCGTGTTTCATTGTCTCCATCCTCATGATTGGCCTACTGACAGCTTTCATTGGAGACCTGGCTTCCCACTTTGGCTGCACCATTGGCCTGAAAGATTCTGTGACTGCAGTCGTGTTCGTCGCACTTGGAACATCAGTGCCA
CircID chr2:40139401|40177855
ORF Type ORF2
Protein Length 157
Nucleotide Length 471
Protein Sequence VHHVIETGGQLLFPTFIVVIIFPSTDSDSFNELFSPAVSPNHKGQVCLLNEFVHSTLEFIGFFNDHFQLGVLSQDGAPHFCNAPLLFLFAGQWLLVIIFVCNGDYSRENRMFSSMNLPEDRLAFHSSSYPFWFLKHKGETALFLIFLTVKYSNGNDL
Nucleotide Sequence GTGCATCACGTAATCGAAACAGGAGGGCAGCTTCTCTTCCCCACATTCATCGTCGTCATCATCTTCCCCAGCACTGACAGTGATAGCTTCAATGAACTGTTCTCTCCAGCTGTTAGTCCCAACCACAAGGGCCAGGTTTGTCTTCTTAATGAGTTTGTCCACAGTACTCTTGAATTCATAGGATTCTTCAATGATCACTTCCAACTTGGTGTGCTCTCCCAGGATGGGGCGCCCCATTTCTGCAATGCGCCTCTCCTCTTCCTCTTTGCTGGTCAGTGGCTGCTTGTCATCATATTCGTCTGCAATGGTGATTACAGTAGAGAGAATCGGATGTTCTCTAGCATGAACCTTCCTGAAGACAGGTTGGCCTTTCATTCCTCTTCTTATCCATTTTGGTTCCTCAAGCACAAGGGAGAAACTGCACTCTTTCTCATATTCCTCACGGTCAAATATTCTAATGGTAATGATCTT
CircID chr2:40139401|40177855
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MNSRVLWTNSLRRQTWPLWLGLTAGENSSLKLSLSVLGKMMTTMNVGKRSCPPVSIT*
Nucleotide Sequence ATGAATTCAAGAGTACTGTGGACAAACTCATTAAGAAGACAAACCTGGCCCTTGTGGTTGGGACTAACAGCTGGAGAGAACAGTTCATTGAAGCTATCACTGTCAGTGCTGGGGAAGATGATGACGACGATGAATGTGGGGAAGAGAAGCTGCCCTCCTGTTTCGATTACGTGA
CircID chr2:40139401|40177855
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MVQPKWEARSPMKAVSRPIMRMETMKHAQPFQYSVGGTKANRTFQNTVRKCIT*
Nucleotide Sequence ATGGTGCAGCCAAAGTGGGAAGCCAGGTCTCCAATGAAAGCTGTCAGTAGGCCAATCATGAGGATGGAGACAATGAAACACGCCCAGCCATTCCAGTATTCAGTAGGGGGGACGAAGGCAAACAGGACCTTCCAGAACACAGTCAGAAAGTGCATCACGTAA
CircID chr2:40139401|40177855
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MITSNLVCSPRMGRPISAMRLSSSSLLVSGCLSSYSSAMVITVERIGCSLA*
Nucleotide Sequence ATGATCACTTCCAACTTGGTGTGCTCTCCCAGGATGGGGCGCCCCATTTCTGCAATGCGCCTCTCCTCTTCCTCTTTGCTGGTCAGTGGCTGCTTGTCATCATATTCGTCTGCAATGGTGATTACAGTAGAGAGAATCGGATGTTCTCTAGCATGA
CircID chr2:40139401|40177855
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MWGREAALLFRLRDALSDCVLEGPVCLRPPY*
Nucleotide Sequence ATGTGGGGAAGAGAAGCTGCCCTCCTGTTTCGATTACGTGATGCACTTTCTGACTGTGTTCTGGAAGGTCCTGTTTGCCTTCGTCCCCCCTACTGA
CircID chr2:40139401|40177855
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MNCSLQLLVPTTRARFVFLMSLSTVLLNS*
Nucleotide Sequence ATGAACTGTTCTCTCCAGCTGTTAGTCCCAACCACAAGGGCCAGGTTTGTCTTCTTAATGAGTTTGTCCACAGTACTCTTGAATTCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:40139401|40177855 IGF2BP2 0 0 1
chr2:40139401|40177855 FUS 4 1 0
chr2:40139401|40177855 TAF15 0 1 0
chr2:40139401|40177855 DKC1 0 1 0
chr2:40139401|40177855 PTBP1 2 0 0
chr2:40139401|40177855 HNRNPC 1 0 0
chr2:40139401|40177855 EWSR1 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab