CircRNA Information

General Information
circRNA Basic Information
CircID chr2:42256501|42282972
Strand +
CircType exon
Host Gene ENSG00000143924.18;
Algorism find_circ;CIRI2;DCC;
Sequence GCCAACCAAGCCCTCGAGCAGTTATTCCCATGTCCTGTATAACCAATGGAAGTGGTGCAAACAGAAAACCAAGTCATACCAGTGCTGTCTCAATTGCAGGAAAAGAAACTCTTTCATCTGCTGCTAAAAGTGGTACAGAAAAAAAGAAAGAAAAACCACAAGGACAGAGAGAAAAAAAAGAGGAATCTCATTCTAATGATCAAAGTCCACAAATTCGAGCATCACCTTCTCCCCAGCCCTCTTCACAACCTCTCCAAATACACAGACAAACTCCAGAAAGCAAGAATGCTACTCCCACCAAAAGGTTTTAACTGTCCCCAAGTACAGAGCTAGGGAATGGTTGTAATGATACCTAAATTCTGTGACTTGGGAAAAAGTTAGCTATCCAAGGATTCTGAGAGAAAAAGCTGGTGGCTTTATTTTTCCCTTCTTCATTGCTTATAATTTATGCTTTATAGCCCATTGGGGAATAAAGAATTAAGGTCACAATTTCTCAGTTAAAACTGGAAAAAAAAAAAAAAAACATAAAACGACCATCACCAGCTGAAAAGTCACATAATTCTTGGGAAAATTCAGATGATAGCCGTAATAAATTGTCGAAAATACCTTCAACACCCAAATTAATACCAAAAGTTACCAAAACTGCAGACAAGCATAAAGATGTCATCATCAACCAAGCAAAAATGTCAACTCGCGAAAAAAACAGCCAAGAAGGAGAATATATTAAAATGTTTATGCGCGGTCGGCCAATTACCATGTTCATTCCTTCCGATGTTGACAACTATGATGACATCAGAACGGAACTGCCTCCTGAGAAGCTCAAACTGGAGTGGGCATATGGTTATCGAGGAAAGGACTGTAGAGCTAATGTTTACCTTCTTCCGACCGGGAAAATAGTTTATTTCATTGCATCAGTAGTAGTACTATTTAATTATGAGGAGAGAACTCAGCGACACTACCTGGGCCATACAGACTGTGTGAAATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:42256501|42282972 hsa-miR-153-5p 0 1 1
chr2:42256501|42282972 hsa-miR-145-5p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:42256501|42282972
ORF Type ORF1
Protein Length 100
Nucleotide Length 300
Protein Sequence MSTREKNSQEGEYIKMFMRGRPITMFIPSDVDNYDDIRTELPPEKLKLEWAYGYRGKDCRANVYLLPTGKIVYFIASVVVLFNYEERTQRHYLGHTDCVK
Nucleotide Sequence ATGTCAACTCGCGAAAAAAACAGCCAAGAAGGAGAATATATTAAAATGTTTATGCGCGGTCGGCCAATTACCATGTTCATTCCTTCCGATGTTGACAACTATGATGACATCAGAACGGAACTGCCTCCTGAGAAGCTCAAACTGGAGTGGGCATATGGTTATCGAGGAAAGGACTGTAGAGCTAATGTTTACCTTCTTCCGACCGGGAAAATAGTTTATTTCATTGCATCAGTAGTAGTACTATTTAATTATGAGGAGAGAACTCAGCGACACTACCTGGGCCATACAGACTGTGTGAAA
CircID chr2:42256501|42282972
ORF Type ORF2
Protein Length 96
Nucleotide Length 288
Protein Sequence MEVVQTENQVIPVLSQLQEKKLFHLLLKVVQKKRKKNHKDREKKKRNLILMIKVHKFEHHLLPSPLHNLSKYTDKLQKARMLLPPKGFNCPQVQS*
Nucleotide Sequence ATGGAAGTGGTGCAAACAGAAAACCAAGTCATACCAGTGCTGTCTCAATTGCAGGAAAAGAAACTCTTTCATCTGCTGCTAAAAGTGGTACAGAAAAAAAGAAAGAAAAACCACAAGGACAGAGAGAAAAAAAAGAGGAATCTCATTCTAATGATCAAAGTCCACAAATTCGAGCATCACCTTCTCCCCAGCCCTCTTCACAACCTCTCCAAATACACAGACAAACTCCAGAAAGCAAGAATGCTACTCCCACCAAAAGGTTTTAACTGTCCCCAAGTACAGAGCTAG
CircID chr2:42256501|42282972
ORF Type ORF3
Protein Length 94
Nucleotide Length 282
Protein Sequence MSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSGTEKKKEKPQGQREKKEESHSNDQSPQIRASPSPQPSSQPLQIHRQTPESKNATPTKRF*
Nucleotide Sequence ATGTCCTGTATAACCAATGGAAGTGGTGCAAACAGAAAACCAAGTCATACCAGTGCTGTCTCAATTGCAGGAAAAGAAACTCTTTCATCTGCTGCTAAAAGTGGTACAGAAAAAAAGAAAGAAAAACCACAAGGACAGAGAGAAAAAAAAGAGGAATCTCATTCTAATGATCAAAGTCCACAAATTCGAGCATCACCTTCTCCCCAGCCCTCTTCACAACCTCTCCAAATACACAGACAAACTCCAGAAAGCAAGAATGCTACTCCCACCAAAAGGTTTTAA
CircID chr2:42256501|42282972
ORF Type ORF4
Protein Length 90
Nucleotide Length 270
Protein Sequence MNMVIGRPRINILIYSPSWLFFSRVDIFAWLMMTSLCLSAVLVTFGINLGVEGIFDNLLRLSSEFSQELCDFSAGDGRFMFFFFFSSFN*
Nucleotide Sequence ATGAACATGGTAATTGGCCGACCGCGCATAAACATTTTAATATATTCTCCTTCTTGGCTGTTTTTTTCGCGAGTTGACATTTTTGCTTGGTTGATGATGACATCTTTATGCTTGTCTGCAGTTTTGGTAACTTTTGGTATTAATTTGGGTGTTGAAGGTATTTTCGACAATTTATTACGGCTATCATCTGAATTTTCCCAAGAATTATGTGACTTTTCAGCTGGTGATGGTCGTTTTATGTTTTTTTTTTTTTTTTCCAGTTTTAACTGA
CircID chr2:42256501|42282972
ORF Type ORF5
Protein Length 79
Nucleotide Length 237
Protein Sequence MSSSTKQKCQLAKKTAKKENILKCLCAVGQLPCSFLPMLTTMMTSERNCLLRSSNWSGHMVIEERTVELMFTFFRPGK*
Nucleotide Sequence ATGTCATCATCAACCAAGCAAAAATGTCAACTCGCGAAAAAAACAGCCAAGAAGGAGAATATATTAAAATGTTTATGCGCGGTCGGCCAATTACCATGTTCATTCCTTCCGATGTTGACAACTATGATGACATCAGAACGGAACTGCCTCCTGAGAAGCTCAAACTGGAGTGGGCATATGGTTATCGAGGAAAGGACTGTAGAGCTAATGTTTACCTTCTTCCGACCGGGAAAATAG
CircID chr2:42256501|42282972
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MKEFLFLQLRQHWYDLVFCLHHFHWLYRTWE*
Nucleotide Sequence ATGAAAGAGTTTCTTTTCCTGCAATTGAGACAGCACTGGTATGACTTGGTTTTCTGTTTGCACCACTTCCATTGGTTATACAGGACATGGGAATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:42256501|42282972 NOP56 1 1 2
chr2:42256501|42282972 ELAVL1 2 2 2
chr2:42256501|42282972 SF3B4 0 1 0
chr2:42256501|42282972 FAM120A 0 0 1
chr2:42256501|42282972 PRPF8 0 2 2
chr2:42256501|42282972 UPF1 0 0 2
chr2:42256501|42282972 FMR1 0 0 5
chr2:42256501|42282972 CPSF6 0 0 1
chr2:42256501|42282972 CPSF4 1 0 0
chr2:42256501|42282972 CNBP 1 0 0
chr2:42256501|42282972 FUS 3 2 0
chr2:42256501|42282972 GNL3 0 0 1
chr2:42256501|42282972 SRSF7 0 0 3
chr2:42256501|42282972 SRSF1 0 0 8
chr2:42256501|42282972 NOP58 0 3 9
chr2:42256501|42282972 U2AF1 5 4 4
chr2:42256501|42282972 U2AF2 18 28 9
chr2:42256501|42282972 SRSF9 0 0 1
chr2:42256501|42282972 DDX54 0 1 15
chr2:42256501|42282972 LSM11 0 1 0
chr2:42256501|42282972 RBM10 0 5 0
chr2:42256501|42282972 PCBP2 0 0 2
chr2:42256501|42282972 PTBP1 0 0 1
chr2:42256501|42282972 HNRNPC 0 1 1
chr2:42256501|42282972 ZNF184 0 0 1
chr2:42256501|42282972 HNRNPA1 2 1 0
chr2:42256501|42282972 DDX3X 0 0 2
chr2:42256501|42282972 SMNDC1 0 3 0
chr2:42256501|42282972 MSI2 0 0 2
chr2:42256501|42282972 ACIN1 0 1 1
chr2:42256501|42282972 LIN28B 0 0 4
chr2:42256501|42282972 LIN28A 0 0 1
chr2:42256501|42282972 FXR1 0 0 2
chr2:42256501|42282972 FXR2 0 0 2
chr2:42256501|42282972 SND1 0 0 2
chr2:42256501|42282972 IGF2BP1 0 1 9
chr2:42256501|42282972 IGF2BP3 0 0 8
chr2:42256501|42282972 IGF2BP2 0 4 20
chr2:42256501|42282972 TARDBP 1 0 1
chr2:42256501|42282972 YTHDC1 0 0 1
chr2:42256501|42282972 BUD13 2 0 3
chr2:42256501|42282972 KHSRP 0 2 0
chr2:42256501|42282972 RBM47 0 0 3
chr2:42256501|42282972 SLTM 0 0 1
chr2:42256501|42282972 DDX42 0 0 1
chr2:42256501|42282972 CSTF2T 0 0 3
chr2:42256501|42282972 CSTF2 1 0 0
chr2:42256501|42282972 CPSF7 0 0 1
chr2:42256501|42282972 TIAL1 0 3 0
chr2:42256501|42282972 TIA1 0 6 0
chr2:42256501|42282972 FBL 1 1 5
chr2:42256501|42282972 AGO1 0 0 1
chr2:42256501|42282972 EIF4A3 1 4 12
chr2:42256501|42282972 AGO2 1 3 12
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab