CircRNA Information

General Information
circRNA Basic Information
CircID chr2:42985627|42985785
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGTGAAAGGTCCAGAGTCATAAAGAGGGGGACAGGGTCCTGGGAGACAGGACCGTGAGGGAGATGGGGTGGTTGTGAGGGAGCTTGAATGTCCTGTTACAGAGTTTAGACTTTATCATTTGGAACCACTCAGGGGCTTGATGAGGAAGGAACGCAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:42985627|42985785 hsa-miR-197-5p 0 0 1
chr2:42985627|42985785 hsa-miR-197-3p 0 0 1
chr2:42985627|42985785 hsa-miR-10a-5p 0 0 1
chr2:42985627|42985785 hsa-miR-10a-3p 0 0 1
chr2:42985627|42985785 hsa-miR-10b-5p 0 0 1
chr2:42985627|42985785 hsa-miR-10b-3p 0 0 1
chr2:42985627|42985785 hsa-miR-181c-5p 0 0 1
chr2:42985627|42985785 hsa-miR-181c-3p 0 0 1
chr2:42985627|42985785 hsa-miR-150-5p 0 0 1
chr2:42985627|42985785 hsa-miR-150-3p 0 0 1
chr2:42985627|42985785 hsa-miR-422a 0 0 1
chr2:42985627|42985785 hsa-miR-492 0 0 1
chr2:42985627|42985785 hsa-miR-181d-5p 0 0 1
chr2:42985627|42985785 hsa-miR-181d-3p 0 0 1
chr2:42985627|42985785 hsa-miR-498-5p 0 0 1
chr2:42985627|42985785 hsa-miR-498-3p 0 0 1
chr2:42985627|42985785 hsa-miR-504-5p 0 0 1
chr2:42985627|42985785 hsa-miR-504-3p 0 0 1
chr2:42985627|42985785 hsa-miR-1226-5p 0 0 1
chr2:42985627|42985785 hsa-miR-1226-3p 0 0 1
chr2:42985627|42985785 hsa-miR-140-5p 0 0 1
chr2:42985627|42985785 hsa-miR-532-3p 0 0 1
chr2:42985627|42985785 hsa-miR-142-5p 0 0 1
chr2:42985627|42985785 hsa-miR-339-5p 1 1 1
chr2:42985627|42985785 hsa-miR-125a-5p 0 0 1
chr2:42985627|42985785 hsa-miR-125b 0 0 1
chr2:42985627|42985785 hsa-miR-378 0 0 1
chr2:42985627|42985785 hsa-miR-181a 0 0 1
chr2:42985627|42985785 hsa-miR-181b 0 0 1
chr2:42985627|42985785 hsa-miR-194 0 0 1
chr2:42985627|42985785 hsa-miR-484 1 0 0
chr2:42985627|42985785 hsa-miR-3183 1 0 0
chr2:42985627|42985785 hsa-miR-4262 0 1 0
chr2:42985627|42985785 hsa-miR-4469 1 1 0
chr2:42985627|42985785 hsa-miR-5193 1 0 0
chr2:42985627|42985785 hsa-miR-6072 0 1 0
chr2:42985627|42985785 hsa-miR-6840-3p 0 1 0
chr2:42985627|42985785 hsa-miR-4700-3p 1 1 0
chr2:42985627|42985785 hsa-miR-138-1-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6796-3p 1 0 0
chr2:42985627|42985785 hsa-miR-4725-5p 0 1 0
chr2:42985627|42985785 hsa-miR-877-3p 1 0 0
chr2:42985627|42985785 hsa-miR-4655-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6882-3p 1 0 0
chr2:42985627|42985785 hsa-miR-4713-5p 0 1 0
chr2:42985627|42985785 hsa-miR-939-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6803-3p 1 0 0
chr2:42985627|42985785 hsa-miR-7113-3p 1 0 0
chr2:42985627|42985785 hsa-miR-3667-3p 0 1 0
chr2:42985627|42985785 hsa-miR-6776-3p 0 1 0
chr2:42985627|42985785 hsa-miR-4646-3p 1 0 0
chr2:42985627|42985785 hsa-miR-7106-3p 1 1 0
chr2:42985627|42985785 hsa-miR-6854-3p 1 1 0
chr2:42985627|42985785 hsa-miR-6867-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6778-3p 1 0 0
chr2:42985627|42985785 hsa-miR-5088-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6760-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6748-3p 0 1 0
chr2:42985627|42985785 hsa-miR-3670 1 0 0
chr2:42985627|42985785 hsa-miR-1229-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6732-3p 1 0 0
chr2:42985627|42985785 hsa-miR-885-5p 1 0 0
chr2:42985627|42985785 hsa-miR-3127-3p 1 0 0
chr2:42985627|42985785 hsa-miR-4685-3p 0 1 0
chr2:42985627|42985785 hsa-miR-10398-5p 1 0 0
chr2:42985627|42985785 hsa-miR-6792-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6775-3p 1 0 0
chr2:42985627|42985785 hsa-miR-3059-5p 1 0 0
chr2:42985627|42985785 hsa-miR-6511b-3p 1 0 0
chr2:42985627|42985785 hsa-miR-6891-3p 0 1 0
chr2:42985627|42985785 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:42985627|42985785
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MIKSKLCNRTFKLPHNHPISLTVLSPRTLSPSL
Nucleotide Sequence ATGATAAAGTCTAAACTCTGTAACAGGACATTCAAGCTCCCTCACAACCACCCCATCTCCCTCACGGTCCTGTCTCCCAGGACCCTGTCCCCCTCTTTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab