CircRNA Information

General Information
circRNA Basic Information
CircID chr2:43224369|43224533
Strand +
CircType exon
Host Gene ENSG00000152518.6;
Algorism CIRI2;
Sequence CTCCCTCGCCGCCCTTCAGCTTCCAGCTGCCGCGCCGCCTGTCCGACTCGCCCGTGTTCGACGCGCCCCCCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGCTACCTAAGCGGCTCCCTGAGCTCCGGCAGCCTCAGCGGCTCTGAGTCTCCCAGCCTCGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:43224369|43224533 hsa-miR-196b-5p 0 0 1
chr2:43224369|43224533 hsa-miR-196b-3p 0 0 1
chr2:43224369|43224533 hsa-miR-602 1 1 1
chr2:43224369|43224533 hsa-miR-637 1 1 1
chr2:43224369|43224533 hsa-miR-1203 1 1 1
chr2:43224369|43224533 hsa-miR-1266-5p 0 0 1
chr2:43224369|43224533 hsa-miR-1266-3p 0 0 1
chr2:43224369|43224533 hsa-miR-671-5p 1 0 1
chr2:43224369|43224533 hsa-miR-485-5p 0 1 1
chr2:43224369|43224533 hsa-miR-331-5p 0 0 1
chr2:43224369|43224533 hsa-miR-1207-3p 0 0 1
chr2:43224369|43224533 hsa-miR-196a 0 0 1
chr2:43224369|43224533 hsa-miR-639 1 0 0
chr2:43224369|43224533 hsa-miR-663a 1 0 0
chr2:43224369|43224533 hsa-miR-762 1 1 0
chr2:43224369|43224533 hsa-miR-1268a 1 0 0
chr2:43224369|43224533 hsa-miR-1275 1 0 0
chr2:43224369|43224533 hsa-miR-1469 1 0 0
chr2:43224369|43224533 hsa-miR-2861 1 0 0
chr2:43224369|43224533 hsa-miR-3141 0 1 0
chr2:43224369|43224533 hsa-miR-3196 1 0 0
chr2:43224369|43224533 hsa-miR-4281 1 0 0
chr2:43224369|43224533 hsa-miR-4285 0 1 0
chr2:43224369|43224533 hsa-miR-3652 1 0 0
chr2:43224369|43224533 hsa-miR-3937 1 1 0
chr2:43224369|43224533 hsa-miR-1268b 1 0 0
chr2:43224369|43224533 hsa-miR-4449 1 0 0
chr2:43224369|43224533 hsa-miR-4466 1 0 0
chr2:43224369|43224533 hsa-miR-4467 1 1 0
chr2:43224369|43224533 hsa-miR-4479 1 1 0
chr2:43224369|43224533 hsa-miR-4488 1 0 0
chr2:43224369|43224533 hsa-miR-4492 1 1 0
chr2:43224369|43224533 hsa-miR-4497 1 0 0
chr2:43224369|43224533 hsa-miR-4498 1 1 0
chr2:43224369|43224533 hsa-miR-4505 1 1 0
chr2:43224369|43224533 hsa-miR-4507 1 0 0
chr2:43224369|43224533 hsa-miR-4508 1 0 0
chr2:43224369|43224533 hsa-miR-4518 0 1 0
chr2:43224369|43224533 hsa-miR-1587 1 0 0
chr2:43224369|43224533 hsa-miR-3960 1 1 0
chr2:43224369|43224533 hsa-miR-4651 1 0 0
chr2:43224369|43224533 hsa-miR-4656 1 0 0
chr2:43224369|43224533 hsa-miR-4706 1 0 0
chr2:43224369|43224533 hsa-miR-4741 1 0 0
chr2:43224369|43224533 hsa-miR-4785 0 1 0
chr2:43224369|43224533 hsa-miR-5090 1 0 0
chr2:43224369|43224533 hsa-miR-5787 1 1 0
chr2:43224369|43224533 hsa-miR-6085 1 0 0
chr2:43224369|43224533 hsa-miR-6086 1 0 0
chr2:43224369|43224533 hsa-miR-6090 1 0 0
chr2:43224369|43224533 hsa-miR-7974 1 0 0
chr2:43224369|43224533 hsa-miR-8072 1 0 0
chr2:43224369|43224533 hsa-miR-8085 1 0 0
chr2:43224369|43224533 hsa-miR-8089 1 0 0
chr2:43224369|43224533 hsa-miR-12128 0 1 0
chr2:43224369|43224533 hsa-miR-92a-1-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4731-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6765-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4687-3p 1 0 0
chr2:43224369|43224533 hsa-miR-6854-5p 0 1 0
chr2:43224369|43224533 hsa-miR-6799-5p 1 0 0
chr2:43224369|43224533 hsa-miR-139-3p 1 0 0
chr2:43224369|43224533 hsa-miR-6089 1 0 0
chr2:43224369|43224533 hsa-miR-3192-5p 0 1 0
chr2:43224369|43224533 hsa-miR-6880-5p 1 0 0
chr2:43224369|43224533 hsa-miR-7160-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6820-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6727-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6829-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6732-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6805-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6827-5p 0 1 0
chr2:43224369|43224533 hsa-miR-6798-5p 1 0 0
chr2:43224369|43224533 hsa-miR-2467-3p 1 0 0
chr2:43224369|43224533 hsa-miR-6786-5p 1 0 0
chr2:43224369|43224533 hsa-miR-5088-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6784-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6771-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6749-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4787-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4446-3p 1 0 0
chr2:43224369|43224533 hsa-miR-937-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6789-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6866-5p 1 0 0
chr2:43224369|43224533 hsa-miR-664b-5p 1 0 0
chr2:43224369|43224533 hsa-miR-423-5p 0 1 0
chr2:43224369|43224533 hsa-miR-4649-3p 0 1 0
chr2:43224369|43224533 hsa-miR-6509-5p 0 1 0
chr2:43224369|43224533 hsa-miR-10400-5p 1 1 0
chr2:43224369|43224533 hsa-miR-1207-5p 1 0 0
chr2:43224369|43224533 hsa-miR-1273h-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4763-3p 1 0 0
chr2:43224369|43224533 hsa-miR-6816-5p 1 0 0
chr2:43224369|43224533 hsa-miR-1343-5p 1 0 0
chr2:43224369|43224533 hsa-miR-5001-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6726-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6752-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6754-5p 0 1 0
chr2:43224369|43224533 hsa-miR-6756-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6803-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6813-5p 1 0 0
chr2:43224369|43224533 hsa-miR-7110-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6751-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6788-5p 0 1 0
chr2:43224369|43224533 hsa-miR-3620-5p 1 0 0
chr2:43224369|43224533 hsa-miR-10396a-5p 1 0 0
chr2:43224369|43224533 hsa-miR-10396b-5p 1 0 0
chr2:43224369|43224533 hsa-miR-1237-5p 1 1 0
chr2:43224369|43224533 hsa-miR-328-5p 1 1 0
chr2:43224369|43224533 hsa-miR-4649-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6729-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6777-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6794-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6795-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6846-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6848-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6887-5p 1 0 0
chr2:43224369|43224533 hsa-miR-6889-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4697-5p 1 1 0
chr2:43224369|43224533 hsa-miR-6885-5p 1 1 0
chr2:43224369|43224533 hsa-miR-939-5p 1 0 0
chr2:43224369|43224533 hsa-miR-10394-3p 1 1 0
chr2:43224369|43224533 hsa-miR-3940-5p 1 0 0
chr2:43224369|43224533 hsa-miR-4665-5p 1 1 0
chr2:43224369|43224533 hsa-miR-10398-3p 0 1 0
chr2:43224369|43224533 hsa-miR-4646-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:43224369|43224533
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLD
Nucleotide Sequence CTGCCGCGCCGCCTGTCCGACTCGCCCGTGTTCGACGCGCCCCCCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGCTACCTAAGCGGCTCCCTGAGCTCCGGCAGCCTCAGCGGCTCTGAGTCTCCCAGCCTCGAC
CircID chr2:43224369|43224533
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MSRSDSESGGLGGASNTGESDRRRGSWKLKGGEG
Nucleotide Sequence CTGTCGCGGTCCGACAGCGAGTCCGGGGGGCTGGGGGGCGCGTCGAACACGGGCGAGTCGGACAGGCGGCGCGGCAGCTGGAAGCTGAAGGGCGGCGAGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab