CircRNA Information

General Information
circRNA Basic Information
CircID chr2:47795894|47796063
Strand +
CircType 5-utr
Host Gene ENSG00000116062.14;
Algorism find_circ;CIRI2;DCC;
Sequence GTTCAAAATCAAAGGAAGCCCAGAAGGGAGGTCATTTTTACAGTGCAAAGCCTGAAATACTGAGAGCAATGCAACGTGCAGATGAAGCCTTAAATAAAGACAAGATTAAGAGGCTTGAATTGGCAGTTTGTGATGAGCCCTCAGAGCCAGAAGAGGAAGAAGAGATGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:47795894|47796063 hsa-miR-19a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-19a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-148a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-148a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-34a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-34a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-200b-5p 0 0 1
chr2:47795894|47796063 hsa-miR-200b-3p 0 0 1
chr2:47795894|47796063 hsa-miR-130a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-130a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-152-5p 0 0 1
chr2:47795894|47796063 hsa-miR-152-3p 0 0 1
chr2:47795894|47796063 hsa-miR-200c-5p 0 0 1
chr2:47795894|47796063 hsa-miR-200c-3p 0 0 1
chr2:47795894|47796063 hsa-miR-301a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-301a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-130b-5p 0 0 1
chr2:47795894|47796063 hsa-miR-130b-3p 0 0 1
chr2:47795894|47796063 hsa-miR-148b-5p 0 0 1
chr2:47795894|47796063 hsa-miR-148b-3p 0 0 1
chr2:47795894|47796063 hsa-miR-429 0 0 1
chr2:47795894|47796063 hsa-miR-449a 0 0 1
chr2:47795894|47796063 hsa-miR-527 0 0 1
chr2:47795894|47796063 hsa-miR-449b-5p 0 0 1
chr2:47795894|47796063 hsa-miR-449b-3p 0 0 1
chr2:47795894|47796063 hsa-miR-758-5p 0 0 1
chr2:47795894|47796063 hsa-miR-758-3p 0 0 1
chr2:47795894|47796063 hsa-miR-454-5p 0 0 1
chr2:47795894|47796063 hsa-miR-454-3p 0 0 1
chr2:47795894|47796063 hsa-miR-891a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-891a-3p 0 0 1
chr2:47795894|47796063 hsa-miR-301b-5p 0 0 1
chr2:47795894|47796063 hsa-miR-301b-3p 0 0 1
chr2:47795894|47796063 hsa-miR-1321 0 0 1
chr2:47795894|47796063 hsa-miR-671-5p 1 1 1
chr2:47795894|47796063 hsa-miR-149-5p 0 1 1
chr2:47795894|47796063 hsa-miR-192-3p 0 1 1
chr2:47795894|47796063 hsa-miR-1225-3p 0 0 1
chr2:47795894|47796063 hsa-miR-582-5p 0 0 1
chr2:47795894|47796063 hsa-miR-34c-5p 0 0 1
chr2:47795894|47796063 hsa-miR-518a-5p 0 0 1
chr2:47795894|47796063 hsa-miR-1233 0 0 1
chr2:47795894|47796063 hsa-miR-19b 0 0 1
chr2:47795894|47796063 hsa-miR-219-2-3p 0 0 1
chr2:47795894|47796063 hsa-miR-198 1 1 0
chr2:47795894|47796063 hsa-miR-3125 0 1 0
chr2:47795894|47796063 hsa-miR-3154 1 1 0
chr2:47795894|47796063 hsa-miR-4271 0 1 0
chr2:47795894|47796063 hsa-miR-3666 0 1 0
chr2:47795894|47796063 hsa-miR-3908 0 1 0
chr2:47795894|47796063 hsa-miR-3916 0 1 0
chr2:47795894|47796063 hsa-miR-3918 1 1 0
chr2:47795894|47796063 hsa-miR-4688 1 0 0
chr2:47795894|47796063 hsa-miR-6086 1 0 0
chr2:47795894|47796063 hsa-miR-6124 1 0 0
chr2:47795894|47796063 hsa-miR-8063 0 1 0
chr2:47795894|47796063 hsa-miR-127-5p 1 0 0
chr2:47795894|47796063 hsa-miR-4433a-3p 1 0 0
chr2:47795894|47796063 hsa-miR-6799-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6510-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6807-5p 1 0 0
chr2:47795894|47796063 hsa-miR-505-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6827-5p 1 0 0
chr2:47795894|47796063 hsa-miR-5008-5p 1 0 0
chr2:47795894|47796063 hsa-miR-1226-5p 1 1 0
chr2:47795894|47796063 hsa-miR-4640-5p 1 0 0
chr2:47795894|47796063 hsa-miR-3127-5p 1 0 0
chr2:47795894|47796063 hsa-miR-149-3p 1 0 0
chr2:47795894|47796063 hsa-miR-19b-3p 0 1 0
chr2:47795894|47796063 hsa-miR-1273h-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6797-5p 1 0 0
chr2:47795894|47796063 hsa-miR-4726-5p 1 1 0
chr2:47795894|47796063 hsa-miR-1266-5p 1 1 0
chr2:47795894|47796063 hsa-miR-6773-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6724-5p 1 0 0
chr2:47795894|47796063 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:47795894|47796063
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MQRADEALNKDKIKRLELAVCDEPSEPEEEEEME
Nucleotide Sequence ATGCAACGTGCAGATGAAGCCTTAAATAAAGACAAGATTAAGAGGCTTGAATTGGCAGTTTGTGATGAGCCCTCAGAGCCAGAAGAGGAAGAAGAGATGGAG
CircID chr2:47795894|47796063
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MHVALLSVFQALHCKNDLPSGLPLILN
Nucleotide Sequence CTGCACGTTGCATTGCTCTCAGTATTTCAGGCTTTGCACTGTAAAAATGACCTCCCTTCTGGGCTTCCTTTGATTTTGAAC
CircID chr2:47795894|47796063
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MRAMQRADEALNKDKIKRLELAVCDEPSEPEEEEEME
Nucleotide Sequence CTGAGAGCAATGCAACGTGCAGATGAAGCCTTAAATAAAGACAAGATTAAGAGGCTTGAATTGGCAGTTTGTGATGAGCCCTCAGAGCCAGAAGAGGAAGAAGAGATGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr2:47795894|47796063 NOP56 1 2 2
chr2:47795894|47796063 ELAVL1 3 1 2
chr2:47795894|47796063 NUMA1 0 1 0
chr2:47795894|47796063 KHDRBS1 0 0 1
chr2:47795894|47796063 PRPF8 0 3 1
chr2:47795894|47796063 UPF1 2 0 0
chr2:47795894|47796063 TAF15 0 0 1
chr2:47795894|47796063 FMR1 0 0 6
chr2:47795894|47796063 CPSF6 0 2 3
chr2:47795894|47796063 FUS 0 2 0
chr2:47795894|47796063 SRSF7 0 0 1
chr2:47795894|47796063 SRSF1 0 2 4
chr2:47795894|47796063 NOP58 1 2 1
chr2:47795894|47796063 U2AF1 0 0 1
chr2:47795894|47796063 U2AF2 6 2 3
chr2:47795894|47796063 DDX54 0 3 4
chr2:47795894|47796063 RBM10 2 0 0
chr2:47795894|47796063 PCBP2 0 1 0
chr2:47795894|47796063 PTBP1 0 0 1
chr2:47795894|47796063 HNRNPC 1 0 0
chr2:47795894|47796063 TRA2A 0 2 2
chr2:47795894|47796063 DHX9 1 0 0
chr2:47795894|47796063 HNRNPA1 0 3 0
chr2:47795894|47796063 DDX3X 1 0 1
chr2:47795894|47796063 SMNDC1 1 0 0
chr2:47795894|47796063 MSI2 0 1 1
chr2:47795894|47796063 ACIN1 0 0 1
chr2:47795894|47796063 RANGAP1 0 0 1
chr2:47795894|47796063 FXR2 0 0 1
chr2:47795894|47796063 IGF2BP1 0 0 4
chr2:47795894|47796063 IGF2BP3 0 0 1
chr2:47795894|47796063 IGF2BP2 5 4 7
chr2:47795894|47796063 TARDBP 3 0 0
chr2:47795894|47796063 RBFOX2 0 3 0
chr2:47795894|47796063 SLTM 0 0 1
chr2:47795894|47796063 EIF4G2 0 1 1
chr2:47795894|47796063 CSTF2T 0 1 1
chr2:47795894|47796063 TIA1 0 1 0
chr2:47795894|47796063 DKC1 1 3 0
chr2:47795894|47796063 HNRNPK 0 1 0
chr2:47795894|47796063 AGO2 0 0 1
chr2:47795894|47796063 EIF4A3 1 5 2
chr2:47795894|47796063 FBL 1 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab