CircRNA Information

General Information
circRNA Basic Information
CircID chr2:47798626|47798850
Strand -
CircType exon
Host Gene ENSG00000116062.13;
Algorism CIRI2;
Sequence GTAACAGATAAGAGTGAAGAAGATAATGAAATTGAGAGTGAAGAGGAAGTACAGCCTAAGACACAAGGATCTAGGCGAAGTAGCCGCCAAATAAAAAAACGAAGGGTCATATCAGATTCTGAGAGTGACATTGGTGGCTCTGATGTGGAATTTAAGCCAGACACTAAGGAGGAAGGAAGCAGTGATGAAATAAGCAGTGGAGTGGGGGATAGTGAGAGTGAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:47798626|47798850 hsa-miR-149-5p 0 0 1
chr2:47798626|47798850 hsa-miR-149-3p 0 0 1
chr2:47798626|47798850 hsa-miR-412-5p 0 0 1
chr2:47798626|47798850 hsa-miR-412-3p 0 0 1
chr2:47798626|47798850 hsa-miR-504-5p 0 0 1
chr2:47798626|47798850 hsa-miR-504-3p 0 0 1
chr2:47798626|47798850 hsa-miR-581 0 0 1
chr2:47798626|47798850 hsa-miR-592 0 0 1
chr2:47798626|47798850 hsa-miR-599 0 0 1
chr2:47798626|47798850 hsa-miR-668-5p 0 0 1
chr2:47798626|47798850 hsa-miR-668-3p 0 0 1
chr2:47798626|47798850 hsa-miR-190b-5p 0 0 1
chr2:47798626|47798850 hsa-miR-190b-3p 0 0 1
chr2:47798626|47798850 hsa-miR-1231 0 0 1
chr2:47798626|47798850 hsa-miR-361-3p 0 0 1
chr2:47798626|47798850 hsa-miR-362-5p 0 1 1
chr2:47798626|47798850 hsa-miR-516a-3p 0 1 1
chr2:47798626|47798850 hsa-miR-190 0 0 1
chr2:47798626|47798850 hsa-miR-892a 1 0 0
chr2:47798626|47798850 hsa-miR-943 1 0 0
chr2:47798626|47798850 hsa-miR-1913 1 0 0
chr2:47798626|47798850 hsa-miR-4286 1 1 0
chr2:47798626|47798850 hsa-miR-3920 1 0 0
chr2:47798626|47798850 hsa-miR-3943 1 0 0
chr2:47798626|47798850 hsa-miR-7703 1 0 0
chr2:47798626|47798850 hsa-miR-212-5p 1 0 0
chr2:47798626|47798850 hsa-miR-3692-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6875-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6762-3p 1 1 0
chr2:47798626|47798850 hsa-miR-7110-3p 1 0 0
chr2:47798626|47798850 hsa-miR-877-3p 0 1 0
chr2:47798626|47798850 hsa-miR-4713-5p 1 0 0
chr2:47798626|47798850 hsa-miR-532-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6763-3p 1 0 0
chr2:47798626|47798850 hsa-miR-7161-3p 0 1 0
chr2:47798626|47798850 hsa-miR-3667-3p 0 1 0
chr2:47798626|47798850 hsa-miR-1304-3p 1 0 0
chr2:47798626|47798850 hsa-miR-339-5p 1 0 0
chr2:47798626|47798850 hsa-miR-4695-3p 1 0 0
chr2:47798626|47798850 hsa-miR-4778-3p 0 1 0
chr2:47798626|47798850 hsa-miR-6887-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6837-3p 1 1 0
chr2:47798626|47798850 hsa-miR-6758-3p 1 0 0
chr2:47798626|47798850 hsa-miR-5088-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6773-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6770-3p 0 1 0
chr2:47798626|47798850 hsa-miR-6859-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6777-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6794-3p 1 1 0
chr2:47798626|47798850 hsa-miR-6760-3p 1 1 0
chr2:47798626|47798850 hsa-miR-335-3p 0 1 0
chr2:47798626|47798850 hsa-miR-1178-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6748-3p 1 0 0
chr2:47798626|47798850 hsa-miR-1229-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6798-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6734-3p 1 0 0
chr2:47798626|47798850 hsa-miR-4639-3p 1 1 0
chr2:47798626|47798850 hsa-miR-6729-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6761-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6731-3p 1 1 0
chr2:47798626|47798850 hsa-miR-3613-5p 0 1 0
chr2:47798626|47798850 hsa-miR-3127-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6754-3p 1 0 0
chr2:47798626|47798850 hsa-miR-892c-3p 1 1 0
chr2:47798626|47798850 hsa-miR-6791-3p 1 1 0
chr2:47798626|47798850 hsa-miR-324-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6511a-3p 1 0 0
chr2:47798626|47798850 hsa-miR-6792-3p 1 0 0
chr2:47798626|47798850 hsa-miR-4691-5p 1 0 0
chr2:47798626|47798850 hsa-miR-6833-3p 1 0 0
chr2:47798626|47798850 hsa-miR-7162-5p 0 1 0
chr2:47798626|47798850 hsa-miR-550a-3p 1 0 0
chr2:47798626|47798850 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:47798626|47798850
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MAATSPRSLCLRLYFLFTLNFIIFFTLICY
Nucleotide Sequence TTGGCGGCTACTTCGCCTAGATCCTTGTGTCTTAGGCTGTACTTCCTCTTCACTCTCAATTTCATTATCTTCTTCACTCTTATCTGTTAC
CircID chr2:47798626|47798850
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MLISSLLPSSLVSGLNSTSEPPMSLSESDMTLRFFIWRLLRLDPCVLGCTSSSLSISLSSSLLSV
Nucleotide Sequence CTGCTTATTTCATCACTGCTTCCTTCCTCCTTAGTGTCTGGCTTAAATTCCACATCAGAGCCACCAATGTCACTCTCAGAATCTGATATGACCCTTCGTTTTTTTATTTGGCGGCTACTTCGCCTAGATCCTTGTGTCTTAGGCTGTACTTCCTCTTCACTCTCAATTTCATTATCTTCTTCACTCTTATCTGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab