CircRNA Information

General Information
circRNA Basic Information
CircID chr2:47799412|47799652
Strand +
CircType exon
Host Gene ENSG00000116062.13;
Algorism CIRI2;
Sequence CATATGCACGAGTATGGCCAGAAGAATCTTCCTCTTTTTCTTTGAGGCTAAGAAGATACTTACTGTAGTTCTCAGAGGGATCACCTTCCAGCACACTGTAAGTCTGTGTACCCTTGGTAATGATCCTACAGATCTCCCTCCTCACCACTCTATCATACTTGGATATATGTGCCATCTTTCTACATCGTGCCTCCATCATTTCTGGAGTCTCAGTCTGTTCCACTCGTGCTACTTTATAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:47799412|47799652 hsa-miR-183-5p 0 0 1
chr2:47799412|47799652 hsa-miR-183-3p 0 0 1
chr2:47799412|47799652 hsa-miR-144-5p 0 0 1
chr2:47799412|47799652 hsa-miR-144-3p 0 0 1
chr2:47799412|47799652 hsa-miR-146a-5p 0 0 1
chr2:47799412|47799652 hsa-miR-146a-3p 0 0 1
chr2:47799412|47799652 hsa-miR-340-5p 0 0 1
chr2:47799412|47799652 hsa-miR-340-3p 0 0 1
chr2:47799412|47799652 hsa-miR-448 0 0 1
chr2:47799412|47799652 hsa-miR-517-5p 0 0 1
chr2:47799412|47799652 hsa-miR-517a-3p 0 0 1
chr2:47799412|47799652 hsa-miR-517b-3p 0 0 1
chr2:47799412|47799652 hsa-miR-517c-3p 0 0 1
chr2:47799412|47799652 hsa-miR-559 0 0 1
chr2:47799412|47799652 hsa-miR-562 0 0 1
chr2:47799412|47799652 hsa-miR-583 0 0 1
chr2:47799412|47799652 hsa-miR-589-5p 0 0 1
chr2:47799412|47799652 hsa-miR-589-3p 0 0 1
chr2:47799412|47799652 hsa-miR-600 0 0 1
chr2:47799412|47799652 hsa-miR-648 0 0 1
chr2:47799412|47799652 hsa-miR-650 0 0 1
chr2:47799412|47799652 hsa-miR-548j-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548j-3p 0 0 1
chr2:47799412|47799652 hsa-miR-1287-5p 0 0 1
chr2:47799412|47799652 hsa-miR-1287-3p 0 0 1
chr2:47799412|47799652 hsa-miR-548k 0 0 1
chr2:47799412|47799652 hsa-miR-548l 0 0 1
chr2:47799412|47799652 hsa-miR-139-5p 0 1 1
chr2:47799412|47799652 hsa-miR-142-5p 0 0 1
chr2:47799412|47799652 hsa-miR-508-5p 0 0 1
chr2:47799412|47799652 hsa-miR-582-5p 0 0 1
chr2:47799412|47799652 hsa-miR-146b-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548b-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548d-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548c-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548a-5p 0 0 1
chr2:47799412|47799652 hsa-miR-548i 0 0 1
chr2:47799412|47799652 hsa-miR-642 0 0 1
chr2:47799412|47799652 hsa-miR-548h 0 0 1
chr2:47799412|47799652 hsa-miR-101 0 0 1
chr2:47799412|47799652 hsa-miR-184 1 0 0
chr2:47799412|47799652 hsa-miR-658 1 0 0
chr2:47799412|47799652 hsa-miR-1293 1 0 0
chr2:47799412|47799652 hsa-miR-3132 1 0 0
chr2:47799412|47799652 hsa-miR-4298 1 0 0
chr2:47799412|47799652 hsa-miR-3612 1 1 0
chr2:47799412|47799652 hsa-miR-3916 1 1 0
chr2:47799412|47799652 hsa-miR-4494 0 1 0
chr2:47799412|47799652 hsa-miR-4534 0 1 0
chr2:47799412|47799652 hsa-miR-4647 1 1 0
chr2:47799412|47799652 hsa-miR-4739 1 0 0
chr2:47799412|47799652 hsa-miR-4779 0 1 0
chr2:47799412|47799652 hsa-miR-6127 1 1 0
chr2:47799412|47799652 hsa-miR-6133 1 0 0
chr2:47799412|47799652 hsa-miR-12114 1 0 0
chr2:47799412|47799652 hsa-miR-12115 1 0 0
chr2:47799412|47799652 hsa-miR-4433b-3p 1 0 0
chr2:47799412|47799652 hsa-miR-6765-5p 1 0 0
chr2:47799412|47799652 hsa-miR-7106-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6833-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6757-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6880-5p 1 0 0
chr2:47799412|47799652 hsa-miR-7847-3p 1 0 0
chr2:47799412|47799652 hsa-miR-6721-5p 1 0 0
chr2:47799412|47799652 hsa-miR-197-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6786-5p 1 0 0
chr2:47799412|47799652 hsa-miR-1226-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6753-5p 1 0 0
chr2:47799412|47799652 hsa-miR-149-3p 1 0 0
chr2:47799412|47799652 hsa-miR-6717-5p 1 0 0
chr2:47799412|47799652 hsa-miR-3190-5p 0 1 0
chr2:47799412|47799652 hsa-miR-2276-5p 0 1 0
chr2:47799412|47799652 hsa-miR-891a-3p 1 0 0
chr2:47799412|47799652 hsa-miR-4796-3p 1 1 0
chr2:47799412|47799652 hsa-miR-499b-5p 0 1 0
chr2:47799412|47799652 hsa-miR-6841-5p 0 1 0
chr2:47799412|47799652 hsa-miR-1207-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6865-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6756-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6815-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6851-5p 1 0 0
chr2:47799412|47799652 hsa-miR-11181-3p 1 0 0
chr2:47799412|47799652 hsa-miR-1249-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6797-5p 1 0 0
chr2:47799412|47799652 hsa-miR-328-5p 1 0 0
chr2:47799412|47799652 hsa-miR-4745-5p 1 0 0
chr2:47799412|47799652 hsa-miR-675-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6858-5p 1 1 0
chr2:47799412|47799652 hsa-miR-6883-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6887-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6831-5p 1 1 0
chr2:47799412|47799652 hsa-miR-939-5p 1 0 0
chr2:47799412|47799652 hsa-miR-6891-5p 1 0 0
chr2:47799412|47799652 hsa-miR-10395-5p 0 1 0
chr2:47799412|47799652 hsa-miR-9902 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:47799412|47799652
ORF Type ORF1
Protein Length 76
Nucleotide Length 228
Protein Sequence MARRIFLFFFEAKKILTVVLRGITFQHTVSLCTLGNDPTDLPPHHSIILGYMCHLSTSCLHHFWSLSLFHSCYFIA
Nucleotide Sequence ATGGCCAGAAGAATCTTCCTCTTTTTCTTTGAGGCTAAGAAGATACTTACTGTAGTTCTCAGAGGGATCACCTTCCAGCACACTGTAAGTCTGTGTACCCTTGGTAATGATCCTACAGATCTCCCTCCTCACCACTCTATCATACTTGGATATATGTGCCATCTTTCTACATCGTGCCTCCATCATTTCTGGAGTCTCAGTCTGTTCCACTCGTGCTACTTTATAGCC
CircID chr2:47799412|47799652
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MVMILQISLLTTLSYLDICAIFLHRASIISGVSVCSTRATL
Nucleotide Sequence TTGGTAATGATCCTACAGATCTCCCTCCTCACCACTCTATCATACTTGGATATATGTGCCATCTTTCTACATCGTGCCTCCATCATTTCTGGAGTCTCAGTCTGTTCCACTCGTGCTACTTTATAG
CircID chr2:47799412|47799652
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAY
Nucleotide Sequence ATGATGGAGGCACGATGTAGAAAGATGGCACATATATCCAAGTATGATAGAGTGGTGAGGAGGGAGATCTGTAGGATCATTACCAAGGGTACACAGACTTACAGTGTGCTGGAAGGTGATCCCTCTGAGAACTACAGTAAGTATCTTCTTAGCCTCAAAGAAAAAGAGGAAGATTCTTCTGGCCATACTCGTGCATAT
CircID chr2:47799412|47799652
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MRTTVSIFLASKKKRKILLAILVHM
Nucleotide Sequence CTGAGAACTACAGTAAGTATCTTCTTAGCCTCAAAGAAAAAGAGGAAGATTCTTCTGGCCATACTCGTGCATATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab