CircRNA Information

General Information
circRNA Basic Information
CircID chr2:55050139|55050291
Strand +
CircType exon
Host Gene ENSG00000115310.16;
Algorism CIRI2;
Sequence CTGGACCAGTCTCCTCTGGTCTCGTCCTCGGACAGCCCACCCCGGCCGCAGCCCGCGTTCAAGTACCAGTTCGTGAGGGAGCCCGAGGACGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGACGAGGACGAAGACCTGGAGGAGCTGGAGGTG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:55050139|55050291 hsa-miR-604 0 0 1
chr2:55050139|55050291 hsa-miR-608 0 1 1
chr2:55050139|55050291 hsa-miR-611 0 0 1
chr2:55050139|55050291 hsa-miR-766-5p 0 0 1
chr2:55050139|55050291 hsa-miR-766-3p 0 0 1
chr2:55050139|55050291 hsa-miR-541-5p 0 0 1
chr2:55050139|55050291 hsa-miR-541-3p 0 0 1
chr2:55050139|55050291 hsa-miR-887-5p 0 0 1
chr2:55050139|55050291 hsa-miR-887-3p 0 0 1
chr2:55050139|55050291 hsa-miR-1236-5p 0 0 1
chr2:55050139|55050291 hsa-miR-1236-3p 0 0 1
chr2:55050139|55050291 hsa-miR-654-5p 0 1 1
chr2:55050139|55050291 hsa-miR-582-3p 0 0 1
chr2:55050139|55050291 hsa-miR-762 1 0 0
chr2:55050139|55050291 hsa-miR-3131 0 1 0
chr2:55050139|55050291 hsa-miR-3181 1 0 0
chr2:55050139|55050291 hsa-miR-3183 1 0 0
chr2:55050139|55050291 hsa-miR-4326 1 0 0
chr2:55050139|55050291 hsa-miR-4268 0 1 0
chr2:55050139|55050291 hsa-miR-4290 1 0 0
chr2:55050139|55050291 hsa-miR-3909 1 0 0
chr2:55050139|55050291 hsa-miR-4469 1 0 0
chr2:55050139|55050291 hsa-miR-1587 1 1 0
chr2:55050139|55050291 hsa-miR-4539 1 0 0
chr2:55050139|55050291 hsa-miR-4674 1 0 0
chr2:55050139|55050291 hsa-miR-4734 1 1 0
chr2:55050139|55050291 hsa-miR-4741 1 1 0
chr2:55050139|55050291 hsa-miR-5193 1 1 0
chr2:55050139|55050291 hsa-miR-5787 1 0 0
chr2:55050139|55050291 hsa-miR-6749-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6881-3p 1 1 0
chr2:55050139|55050291 hsa-miR-4786-5p 0 1 0
chr2:55050139|55050291 hsa-miR-6089 1 0 0
chr2:55050139|55050291 hsa-miR-6875-3p 1 1 0
chr2:55050139|55050291 hsa-miR-6845-3p 1 0 0
chr2:55050139|55050291 hsa-miR-877-3p 1 1 0
chr2:55050139|55050291 hsa-miR-4655-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3150b-3p 0 1 0
chr2:55050139|55050291 hsa-miR-3691-3p 1 0 0
chr2:55050139|55050291 hsa-miR-4436b-5p 1 0 0
chr2:55050139|55050291 hsa-miR-615-5p 1 0 0
chr2:55050139|55050291 hsa-miR-3944-3p 1 0 0
chr2:55050139|55050291 hsa-miR-5001-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3667-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3677-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6847-5p 0 1 0
chr2:55050139|55050291 hsa-miR-6809-3p 1 1 0
chr2:55050139|55050291 hsa-miR-7111-3p 1 1 0
chr2:55050139|55050291 hsa-miR-6830-3p 1 0 0
chr2:55050139|55050291 hsa-miR-5196-3p 1 1 0
chr2:55050139|55050291 hsa-miR-6736-3p 0 1 0
chr2:55050139|55050291 hsa-miR-7154-5p 0 1 0
chr2:55050139|55050291 hsa-miR-339-5p 1 0 0
chr2:55050139|55050291 hsa-miR-1237-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3158-3p 1 0 0
chr2:55050139|55050291 hsa-miR-4778-3p 0 1 0
chr2:55050139|55050291 hsa-miR-1238-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6758-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6826-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6886-3p 1 0 0
chr2:55050139|55050291 hsa-miR-5088-3p 1 0 0
chr2:55050139|55050291 hsa-miR-2277-5p 1 0 0
chr2:55050139|55050291 hsa-miR-6880-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6734-3p 1 0 0
chr2:55050139|55050291 hsa-miR-1249-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6780b-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6790-3p 1 0 0
chr2:55050139|55050291 hsa-miR-10400-5p 1 0 0
chr2:55050139|55050291 hsa-miR-6756-5p 0 1 0
chr2:55050139|55050291 hsa-miR-320a-5p 1 1 0
chr2:55050139|55050291 hsa-miR-6852-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3620-5p 1 1 0
chr2:55050139|55050291 hsa-miR-4726-5p 0 1 0
chr2:55050139|55050291 hsa-miR-6791-3p 0 1 0
chr2:55050139|55050291 hsa-miR-2682-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6756-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6792-3p 1 0 0
chr2:55050139|55050291 hsa-miR-6829-3p 1 0 0
chr2:55050139|55050291 hsa-miR-10400-3p 1 0 0
chr2:55050139|55050291 hsa-miR-3059-5p 1 0 0
chr2:55050139|55050291 hsa-miR-6891-3p 1 1 0
chr2:55050139|55050291 hsa-miR-4691-5p 1 1 0
chr2:55050139|55050291 hsa-miR-323b-5p 0 1 0
chr2:55050139|55050291 hsa-miR-6827-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:55050139|55050291
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LDQSPLVSSSDSPPRPQPAFKYQFVREPEDEEEEEEEEEEDEDEDLEELEV
Nucleotide Sequence CTGGACCAGTCTCCTCTGGTCTCGTCCTCGGACAGCCCACCCCGGCCGCAGCCCGCGTTCAAGTACCAGTTCGTGAGGGAGCCCGAGGACGAGGAGGAAGAAGAGGAGGAGGAAGAGGAGGACGAGGACGAAGACCTGGAGGAGCTGGAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab