CircRNA Information

General Information
circRNA Basic Information
CircID chr2:64592704|64592938
Strand +
CircType exon
Host Gene ENSG00000119844.13;
Algorism CIRI2;
Sequence CTTGGGCATGCACATTAACCTTGTTAGAGGTTCTTCTACATGTCTCTCTTTTTTCCATAGGAATTTCCCCAAACATTTAAAACCCATAGTTTTCACTGTATATACAGCCTAAACCATAGCAATCTATGATTATGTCATTTTACACTGTGCAAAATCCTCAAAAAATAGTGGTACAATAGAACAAAAAAATCAGTAACAAGTAAATTCCATTGTAAGACATTCATATAATTTGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:64592704|64592938 hsa-miR-375-5p 0 0 1
chr2:64592704|64592938 hsa-miR-375-3p 0 0 1
chr2:64592704|64592938 hsa-miR-376b-5p 0 0 1
chr2:64592704|64592938 hsa-miR-376b-3p 0 0 1
chr2:64592704|64592938 hsa-miR-507 0 0 1
chr2:64592704|64592938 hsa-miR-557 0 1 1
chr2:64592704|64592938 hsa-miR-569 0 0 1
chr2:64592704|64592938 hsa-miR-570-5p 0 0 1
chr2:64592704|64592938 hsa-miR-570-3p 0 0 1
chr2:64592704|64592938 hsa-miR-584-5p 0 0 1
chr2:64592704|64592938 hsa-miR-584-3p 0 0 1
chr2:64592704|64592938 hsa-miR-600 0 0 1
chr2:64592704|64592938 hsa-miR-624-5p 0 0 1
chr2:64592704|64592938 hsa-miR-624-3p 0 0 1
chr2:64592704|64592938 hsa-miR-629-5p 0 0 1
chr2:64592704|64592938 hsa-miR-629-3p 0 0 1
chr2:64592704|64592938 hsa-miR-1290 0 0 1
chr2:64592704|64592938 hsa-miR-1304-5p 0 0 1
chr2:64592704|64592938 hsa-miR-1304-3p 0 0 1
chr2:64592704|64592938 hsa-miR-129-5p 0 0 1
chr2:64592704|64592938 hsa-miR-1224-5p 0 0 1
chr2:64592704|64592938 hsa-miR-337-3p 0 0 1
chr2:64592704|64592938 hsa-miR-299-5p 0 0 1
chr2:64592704|64592938 hsa-miR-548b-3p 0 0 1
chr2:64592704|64592938 hsa-miR-450b-5p 0 0 1
chr2:64592704|64592938 hsa-miR-128 0 0 1
chr2:64592704|64592938 hsa-miR-376a 0 0 1
chr2:64592704|64592938 hsa-miR-1185 0 0 1
chr2:64592704|64592938 hsa-miR-1259 0 0 1
chr2:64592704|64592938 hsa-miR-1183 1 0 0
chr2:64592704|64592938 hsa-miR-1262 1 0 0
chr2:64592704|64592938 hsa-miR-3150a-3p 1 0 0
chr2:64592704|64592938 hsa-miR-7160-5p 1 0 0
chr2:64592704|64592938 hsa-miR-6793-5p 1 0 0
chr2:64592704|64592938 hsa-miR-6760-5p 0 1 0
chr2:64592704|64592938 hsa-miR-6740-5p 1 0 0
chr2:64592704|64592938 hsa-miR-193b-5p 1 0 0
chr2:64592704|64592938 hsa-miR-625-5p 0 1 0
chr2:64592704|64592938 hsa-miR-4761-5p 1 0 0
chr2:64592704|64592938 hsa-miR-2114-3p 0 1 0
chr2:64592704|64592938 hsa-miR-6812-5p 1 0 0
chr2:64592704|64592938 hsa-miR-6780b-5p 1 0 0
chr2:64592704|64592938 hsa-miR-4700-5p 1 0 0
chr2:64592704|64592938 hsa-miR-4716-3p 1 0 0
chr2:64592704|64592938 hsa-miR-1185-1-3p 0 1 0
chr2:64592704|64592938 hsa-miR-1185-2-3p 0 1 0
chr2:64592704|64592938 hsa-miR-301b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:64592704|64592938
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence LGMHINLVRGSSTCLSFFHRNFPKHLKPIVFTVYTA
Nucleotide Sequence TTGGGCATGCACATTAACCTTGTTAGAGGTTCTTCTACATGTCTCTCTTTTTTCCATAGGAATTTCCCCAAACATTTAAAACCCATAGTTTTCACTGTATATACAGCCTAA
CircID chr2:64592704|64592938
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MFGEIPMEKRETCRRTSNKVNVHAQ
Nucleotide Sequence ATGTTTGGGGAAATTCCTATGGAAAAAAGAGAGACATGTAGAAGAACCTCTAACAAGGTTAATGTGCATGCCCAA
CircID chr2:64592704|64592938
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MGFKCLGKFLWKKERHVEEPLTRLMCMPK
Nucleotide Sequence ATGGGTTTTAAATGTTTGGGGAAATTCCTATGGAAAAAAGAGAGACATGTAGAAGAACCTCTAACAAGGTTAATGTGCATGCCCAAG
CircID chr2:64592704|64592938
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MNVLQWNLLVTDFFVLLYHYFLRILHSVK
Nucleotide Sequence ATGAATGTCTTACAATGGAATTTACTTGTTACTGATTTTTTTGTTCTATTGTACCACTATTTTTTGAGGATTTTGCACAGTGTAAAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab