CircRNA Information

General Information
circRNA Basic Information
CircID chr2:65023489|65023641
Strand +
CircType exon
Host Gene ENSG00000115902.9;
Algorism CIRI2;
Sequence AGCACATTCTCTCTTCTCGCCTCCAAGGGGAAGGGCCACCTGCACACTCTCGGAAGCACCCTTCTCCAGACCCAGACACGCTTCTTACTGCAGGGCCAGGCCAGGACACAGGATGGTCGGCCAATGAGTCTTAAGTCCAGCTCTAATTTCACG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:65023489|65023641 hsa-miR-208a-5p 0 0 1
chr2:65023489|65023641 hsa-miR-208a-3p 0 0 1
chr2:65023489|65023641 hsa-miR-187-5p 0 0 1
chr2:65023489|65023641 hsa-miR-187-3p 0 0 1
chr2:65023489|65023641 hsa-miR-328-5p 0 0 1
chr2:65023489|65023641 hsa-miR-328-3p 0 0 1
chr2:65023489|65023641 hsa-miR-422a 0 1 1
chr2:65023489|65023641 hsa-miR-432-5p 0 0 1
chr2:65023489|65023641 hsa-miR-432-3p 0 0 1
chr2:65023489|65023641 hsa-miR-648 0 1 1
chr2:65023489|65023641 hsa-miR-650 0 0 1
chr2:65023489|65023641 hsa-miR-657 0 0 1
chr2:65023489|65023641 hsa-miR-208b-5p 0 0 1
chr2:65023489|65023641 hsa-miR-208b-3p 0 0 1
chr2:65023489|65023641 hsa-miR-1231 0 1 1
chr2:65023489|65023641 hsa-miR-663b 0 0 1
chr2:65023489|65023641 hsa-miR-1291 0 1 1
chr2:65023489|65023641 hsa-miR-1253 0 0 1
chr2:65023489|65023641 hsa-miR-193a-5p 0 0 1
chr2:65023489|65023641 hsa-miR-574-5p 0 1 1
chr2:65023489|65023641 hsa-miR-516a-3p 0 0 1
chr2:65023489|65023641 hsa-miR-378 0 0 1
chr2:65023489|65023641 hsa-miR-516b 0 0 1
chr2:65023489|65023641 hsa-miR-768-5p 0 0 1
chr2:65023489|65023641 hsa-miR-499-5p 0 0 1
chr2:65023489|65023641 hsa-miR-762 1 0 0
chr2:65023489|65023641 hsa-miR-760 1 0 0
chr2:65023489|65023641 hsa-miR-1182 0 1 0
chr2:65023489|65023641 hsa-miR-378b 0 1 0
chr2:65023489|65023641 hsa-miR-3154 0 1 0
chr2:65023489|65023641 hsa-miR-3155a 1 0 0
chr2:65023489|65023641 hsa-miR-3176 0 1 0
chr2:65023489|65023641 hsa-miR-378c 1 1 0
chr2:65023489|65023641 hsa-miR-3612 1 0 0
chr2:65023489|65023641 hsa-miR-378e 0 1 0
chr2:65023489|65023641 hsa-miR-378f 0 1 0
chr2:65023489|65023641 hsa-miR-378h 0 1 0
chr2:65023489|65023641 hsa-miR-3155b 1 0 0
chr2:65023489|65023641 hsa-miR-4487 0 1 0
chr2:65023489|65023641 hsa-miR-4516 1 1 0
chr2:65023489|65023641 hsa-miR-4531 0 1 0
chr2:65023489|65023641 hsa-miR-378i 0 1 0
chr2:65023489|65023641 hsa-miR-4669 1 0 0
chr2:65023489|65023641 hsa-miR-4710 1 0 0
chr2:65023489|65023641 hsa-miR-5192 1 0 0
chr2:65023489|65023641 hsa-miR-6090 1 0 0
chr2:65023489|65023641 hsa-miR-8057 1 1 0
chr2:65023489|65023641 hsa-miR-8073 1 0 0
chr2:65023489|65023641 hsa-miR-12115 1 0 0
chr2:65023489|65023641 hsa-miR-17-3p 0 1 0
chr2:65023489|65023641 hsa-miR-6861-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6804-5p 0 1 0
chr2:65023489|65023641 hsa-miR-6746-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6805-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6874-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6740-5p 1 1 0
chr2:65023489|65023641 hsa-miR-6516-5p 0 1 0
chr2:65023489|65023641 hsa-miR-4638-3p 1 0 0
chr2:65023489|65023641 hsa-miR-3619-3p 0 1 0
chr2:65023489|65023641 hsa-miR-6870-5p 1 0 0
chr2:65023489|65023641 hsa-miR-5001-5p 1 0 0
chr2:65023489|65023641 hsa-miR-3620-5p 1 0 0
chr2:65023489|65023641 hsa-miR-5196-5p 1 0 0
chr2:65023489|65023641 hsa-miR-1237-5p 1 0 0
chr2:65023489|65023641 hsa-miR-4649-5p 1 0 0
chr2:65023489|65023641 hsa-miR-4725-3p 1 0 0
chr2:65023489|65023641 hsa-miR-4726-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6729-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6858-5p 1 0 0
chr2:65023489|65023641 hsa-miR-6845-5p 1 0 0
chr2:65023489|65023641 hsa-miR-939-5p 1 0 0
chr2:65023489|65023641 hsa-miR-378a-3p 0 1 0
chr2:65023489|65023641 hsa-miR-378d 0 1 0
chr2:65023489|65023641 hsa-miR-3922-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:65023489|65023641
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MHTLGSTLLQTQTRFLLQGQARTQDGRPMSLKSSSNFT
Nucleotide Sequence CTGCACACTCTCGGAAGCACCCTTCTCCAGACCCAGACACGCTTCTTACTGCAGGGCCAGGCCAGGACACAGGATGGTCGGCCAATGAGTCTTAAGTCCAGCTCTAATTTCACG
CircID chr2:65023489|65023641
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MGLEKGASESVQVALPLGGEKRECA
Nucleotide Sequence CTGGGTCTGGAGAAGGGTGCTTCCGAGAGTGTGCAGGTGGCCCTTCCCCTTGGAGGCGAGAAGAGAGAATGTGCT
CircID chr2:65023489|65023641
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MDLRLIGRPSCVLAWPCSKKRVWVWRRVLPRVCRWPFPLEARRENV
Nucleotide Sequence CTGGACTTAAGACTCATTGGCCGACCATCCTGTGTCCTGGCCTGGCCCTGCAGTAAGAAGCGTGTCTGGGTCTGGAGAAGGGTGCTTCCGAGAGTGTGCAGGTGGCCCTTCCCCTTGGAGGCGAGAAGAGAGAATGTG
CircID chr2:65023489|65023641
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MADHPVSWPGPAVRSVSGSGEGCFRECAGGPSPWRREERMC
Nucleotide Sequence TTGGCCGACCATCCTGTGTCCTGGCCTGGCCCTGCAGTAAGAAGCGTGTCTGGGTCTGGAGAAGGGTGCTTCCGAGAGTGTGCAGGTGGCCCTTCCCCTTGGAGGCGAGAAGAGAGAATGTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab