CircRNA Information

General Information
circRNA Basic Information
CircID chr2:70049897|70050068
Strand +
CircType exon
Host Gene ENSG00000179818.12;
Algorism CIRI2;
Sequence CTTGTGATCTGCCCACCTCAGCCTCGAAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTTGTATTTTTTTTCAGTTTGGGTAGCTGTCCCTAATTCATTTGTTAAAGGAGAAGCAAGAGCAAGAACCTTTAATCTGTTCTCCTCTTCCCTAATTTGAAAGTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:70049897|70050068 hsa-miR-381-5p 0 0 1
chr2:70049897|70050068 hsa-miR-381-3p 0 0 1
chr2:70049897|70050068 hsa-miR-495-5p 0 0 1
chr2:70049897|70050068 hsa-miR-495-3p 0 0 1
chr2:70049897|70050068 hsa-miR-607 0 0 1
chr2:70049897|70050068 hsa-miR-624-5p 0 0 1
chr2:70049897|70050068 hsa-miR-624-3p 0 0 1
chr2:70049897|70050068 hsa-miR-300 0 0 1
chr2:70049897|70050068 hsa-miR-541-5p 0 0 1
chr2:70049897|70050068 hsa-miR-541-3p 0 0 1
chr2:70049897|70050068 hsa-miR-548m 0 0 1
chr2:70049897|70050068 hsa-miR-513b-5p 0 0 1
chr2:70049897|70050068 hsa-miR-513b-3p 0 0 1
chr2:70049897|70050068 hsa-miR-485-5p 0 0 1
chr2:70049897|70050068 hsa-miR-654-5p 0 0 1
chr2:70049897|70050068 hsa-miR-24 0 0 1
chr2:70049897|70050068 hsa-miR-638 1 0 0
chr2:70049897|70050068 hsa-miR-3188 1 0 0
chr2:70049897|70050068 hsa-miR-3929 1 1 0
chr2:70049897|70050068 hsa-miR-4478 0 1 0
chr2:70049897|70050068 hsa-miR-4492 1 0 0
chr2:70049897|70050068 hsa-miR-4505 1 1 0
chr2:70049897|70050068 hsa-miR-4508 1 0 0
chr2:70049897|70050068 hsa-miR-4656 1 0 0
chr2:70049897|70050068 hsa-miR-4688 1 0 0
chr2:70049897|70050068 hsa-miR-4739 1 1 0
chr2:70049897|70050068 hsa-miR-5090 1 0 0
chr2:70049897|70050068 hsa-miR-5693 0 1 0
chr2:70049897|70050068 hsa-miR-5787 1 1 0
chr2:70049897|70050068 hsa-miR-6077 0 1 0
chr2:70049897|70050068 hsa-miR-6085 1 0 0
chr2:70049897|70050068 hsa-miR-6086 1 1 0
chr2:70049897|70050068 hsa-miR-6134 0 1 0
chr2:70049897|70050068 hsa-miR-8089 1 0 0
chr2:70049897|70050068 hsa-miR-9500 0 1 0
chr2:70049897|70050068 hsa-miR-211-3p 1 0 0
chr2:70049897|70050068 hsa-miR-7106-5p 1 0 0
chr2:70049897|70050068 hsa-miR-7160-5p 0 1 0
chr2:70049897|70050068 hsa-miR-6727-5p 1 0 0
chr2:70049897|70050068 hsa-miR-197-5p 1 0 0
chr2:70049897|70050068 hsa-miR-6776-5p 0 1 0
chr2:70049897|70050068 hsa-miR-3126-5p 1 1 0
chr2:70049897|70050068 hsa-miR-3150b-3p 0 1 0
chr2:70049897|70050068 hsa-miR-6784-5p 1 0 0
chr2:70049897|70050068 hsa-miR-92b-5p 1 0 0
chr2:70049897|70050068 hsa-miR-6749-5p 1 0 0
chr2:70049897|70050068 hsa-miR-3202 0 1 0
chr2:70049897|70050068 hsa-miR-6789-5p 1 0 0
chr2:70049897|70050068 hsa-miR-7162-3p 0 1 0
chr2:70049897|70050068 hsa-miR-5003-3p 0 1 0
chr2:70049897|70050068 hsa-miR-20b-3p 0 1 0
chr2:70049897|70050068 hsa-miR-5001-5p 0 1 0
chr2:70049897|70050068 hsa-miR-6813-5p 1 0 0
chr2:70049897|70050068 hsa-miR-11181-3p 0 1 0
chr2:70049897|70050068 hsa-miR-3620-5p 1 0 0
chr2:70049897|70050068 hsa-miR-5196-5p 0 1 0
chr2:70049897|70050068 hsa-miR-4632-5p 1 0 0
chr2:70049897|70050068 hsa-miR-6846-5p 1 0 0
chr2:70049897|70050068 hsa-miR-6848-5p 1 0 0
chr2:70049897|70050068 hsa-miR-6884-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:70049897|70050068
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MRPALYFFSVWVAVPNSFVKGEARARTFNLFSSSLI
Nucleotide Sequence CTGCGCCCAGCCTTGTATTTTTTTTCAGTTTGGGTAGCTGTCCCTAATTCATTTGTTAAAGGAGAAGCAAGAGCAAGAACCTTTAATCTGTTCTCCTCTTCCCTAATTTGA
CircID chr2:70049897|70050068
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MPTSASKSAGITGVSHCAQPCIFFQFG
Nucleotide Sequence CTGCCCACCTCAGCCTCGAAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCAGCCTTGTATTTTTTTTCAGTTTGGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab