CircRNA Information

General Information
circRNA Basic Information
CircID chr2:72177557|72177739
Strand -
CircType exon
Host Gene ENSG00000144036.13;
Algorism CIRI2;
Sequence CCTGGCCAACCATCCAGCCCTCAGGATGAGCCTCAGCAGCATCTATGAGCTCACATGTAGCCTGGTCTCTCCAGCTTTGAGGAAATTTGTATGTCTGTGTGCACATCCTCTTCCCCATGACTATCAAGATATGATAGGATATGGTGAGGTAGGGGGGTTGGGGAGGGGCAAGGAAGTACTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:72177557|72177739 hsa-miR-221-5p 0 0 1
chr2:72177557|72177739 hsa-miR-221-3p 0 0 1
chr2:72177557|72177739 hsa-miR-222-5p 0 0 1
chr2:72177557|72177739 hsa-miR-222-3p 0 0 1
chr2:72177557|72177739 hsa-miR-185-5p 0 0 1
chr2:72177557|72177739 hsa-miR-185-3p 0 0 1
chr2:72177557|72177739 hsa-miR-320a-5p 0 0 1
chr2:72177557|72177739 hsa-miR-320a-3p 0 0 1
chr2:72177557|72177739 hsa-miR-376b-5p 0 0 1
chr2:72177557|72177739 hsa-miR-376b-3p 0 0 1
chr2:72177557|72177739 hsa-miR-487a-5p 0 0 1
chr2:72177557|72177739 hsa-miR-487a-3p 0 0 1
chr2:72177557|72177739 hsa-miR-588 0 0 1
chr2:72177557|72177739 hsa-miR-1238-5p 0 0 1
chr2:72177557|72177739 hsa-miR-1238-3p 0 0 1
chr2:72177557|72177739 hsa-miR-1200 0 0 1
chr2:72177557|72177739 hsa-miR-1287-5p 0 0 1
chr2:72177557|72177739 hsa-miR-1287-3p 0 0 1
chr2:72177557|72177739 hsa-miR-1265 0 0 1
chr2:72177557|72177739 hsa-miR-485-5p 0 0 1
chr2:72177557|72177739 hsa-miR-330-3p 0 0 1
chr2:72177557|72177739 hsa-miR-502-5p 0 0 1
chr2:72177557|72177739 hsa-miR-320b 0 1 1
chr2:72177557|72177739 hsa-miR-320c 0 1 1
chr2:72177557|72177739 hsa-miR-320d 0 0 1
chr2:72177557|72177739 hsa-miR-513a-3p 0 0 1
chr2:72177557|72177739 hsa-miR-1308 0 0 1
chr2:72177557|72177739 hsa-miR-376a 0 0 1
chr2:72177557|72177739 hsa-miR-933 1 0 0
chr2:72177557|72177739 hsa-miR-1275 0 1 0
chr2:72177557|72177739 hsa-miR-302e 0 1 0
chr2:72177557|72177739 hsa-miR-1193 0 1 0
chr2:72177557|72177739 hsa-miR-4296 1 0 0
chr2:72177557|72177739 hsa-miR-4322 1 0 0
chr2:72177557|72177739 hsa-miR-4265 1 0 0
chr2:72177557|72177739 hsa-miR-4271 0 1 0
chr2:72177557|72177739 hsa-miR-4429 0 1 0
chr2:72177557|72177739 hsa-miR-4734 1 0 0
chr2:72177557|72177739 hsa-miR-8066 0 1 0
chr2:72177557|72177739 hsa-miR-93-3p 0 1 0
chr2:72177557|72177739 hsa-miR-6836-3p 1 0 0
chr2:72177557|72177739 hsa-miR-1972 1 0 0
chr2:72177557|72177739 hsa-miR-6892-3p 1 1 0
chr2:72177557|72177739 hsa-miR-210-5p 1 0 0
chr2:72177557|72177739 hsa-miR-4786-5p 1 1 0
chr2:72177557|72177739 hsa-miR-7160-5p 0 1 0
chr2:72177557|72177739 hsa-miR-8069 0 1 0
chr2:72177557|72177739 hsa-miR-1915-5p 0 1 0
chr2:72177557|72177739 hsa-miR-2467-5p 0 1 0
chr2:72177557|72177739 hsa-miR-5088-5p 1 0 0
chr2:72177557|72177739 hsa-miR-1226-5p 0 1 0
chr2:72177557|72177739 hsa-miR-149-3p 1 0 0
chr2:72177557|72177739 hsa-miR-6769a-3p 1 0 0
chr2:72177557|72177739 hsa-miR-4646-3p 1 1 0
chr2:72177557|72177739 hsa-miR-1911-3p 0 1 0
chr2:72177557|72177739 hsa-miR-6887-3p 1 1 0
chr2:72177557|72177739 hsa-miR-6793-3p 0 1 0
chr2:72177557|72177739 hsa-miR-758-5p 0 1 0
chr2:72177557|72177739 hsa-miR-6886-3p 1 0 0
chr2:72177557|72177739 hsa-miR-4749-3p 1 1 0
chr2:72177557|72177739 hsa-miR-328-3p 1 0 0
chr2:72177557|72177739 hsa-miR-4433b-5p 1 0 0
chr2:72177557|72177739 hsa-miR-6734-3p 0 1 0
chr2:72177557|72177739 hsa-miR-3177-5p 1 0 0
chr2:72177557|72177739 hsa-miR-1249-3p 1 0 0
chr2:72177557|72177739 hsa-miR-3162-3p 1 1 0
chr2:72177557|72177739 hsa-miR-6813-5p 1 0 0
chr2:72177557|72177739 hsa-miR-6797-5p 1 0 0
chr2:72177557|72177739 hsa-miR-6846-5p 1 1 0
chr2:72177557|72177739 hsa-miR-6848-5p 1 1 0
chr2:72177557|72177739 hsa-miR-6731-5p 1 0 0
chr2:72177557|72177739 hsa-miR-302a-3p 0 1 0
chr2:72177557|72177739 hsa-miR-302c-3p 0 1 0
chr2:72177557|72177739 hsa-miR-6511a-3p 0 1 0
chr2:72177557|72177739 hsa-miR-6756-3p 1 0 0
chr2:72177557|72177739 hsa-miR-6511b-3p 0 1 0
chr2:72177557|72177739 hsa-miR-302b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:72177557|72177739
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence LANHPALRMSLSSIYELTCSLVSPALRKFVCLCAHPLPHDYQDMIGYGEVGGLGRGKEVL
Nucleotide Sequence CTGGCCAACCATCCAGCCCTCAGGATGAGCCTCAGCAGCATCTATGAGCTCACATGTAGCCTGGTCTCTCCAGCTTTGAGGAAATTTGTATGTCTGTGTGCACATCCTCTTCCCCATGACTATCAAGATATGATAGGATATGGTGAGGTAGGGGGGTTGGGGAGGGGCAAGGAAGTACTT
CircID chr2:72177557|72177739
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MIVMGKRMCTQTYKFPQSWRDQATCELIDAAEAHPEGWMVGQ
Nucleotide Sequence TTGATAGTCATGGGGAAGAGGATGTGCACACAGACATACAAATTTCCTCAAAGCTGGAGAGACCAGGCTACATGTGAGCTCATAGATGCTGCTGAGGCTCATCCTGAGGGCTGGATGGTTGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab