CircRNA Information

General Information
circRNA Basic Information
CircID chr2:72944490|72944610
Strand -
CircType exon
Host Gene ENSG00000144040.11;
Algorism CIRI2;
Sequence CTTCTCTCCCCTCCCCATGCCAGCCCAGGGAGCCATCTGGGCTGGCCATTGTAATATCCTAAATTTACCAGCCTGGCCACCAAACCAGCCCAACTCCAGGCCTAATCTGGCTCGCCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:72944490|72944610 hsa-miR-185-5p 0 0 1
chr2:72944490|72944610 hsa-miR-185-3p 0 0 1
chr2:72944490|72944610 hsa-miR-571 0 0 1
chr2:72944490|72944610 hsa-miR-650 0 0 1
chr2:72944490|72944610 hsa-miR-651-5p 0 0 1
chr2:72944490|72944610 hsa-miR-651-3p 0 0 1
chr2:72944490|72944610 hsa-miR-939-5p 0 0 1
chr2:72944490|72944610 hsa-miR-939-3p 0 0 1
chr2:72944490|72944610 hsa-miR-513a-3p 0 0 1
chr2:72944490|72944610 hsa-miR-1254 0 0 1
chr2:72944490|72944610 hsa-miR-1295 0 0 1
chr2:72944490|72944610 hsa-miR-484 1 0 0
chr2:72944490|72944610 hsa-miR-608 1 0 0
chr2:72944490|72944610 hsa-miR-762 1 0 0
chr2:72944490|72944610 hsa-miR-663b 1 0 0
chr2:72944490|72944610 hsa-miR-1268a 1 0 0
chr2:72944490|72944610 hsa-miR-2861 1 0 0
chr2:72944490|72944610 hsa-miR-3147 1 0 0
chr2:72944490|72944610 hsa-miR-4259 1 0 0
chr2:72944490|72944610 hsa-miR-4292 1 0 0
chr2:72944490|72944610 hsa-miR-3652 1 0 0
chr2:72944490|72944610 hsa-miR-1268b 1 0 0
chr2:72944490|72944610 hsa-miR-4498 1 0 0
chr2:72944490|72944610 hsa-miR-4505 1 0 0
chr2:72944490|72944610 hsa-miR-4507 1 0 0
chr2:72944490|72944610 hsa-miR-1587 1 0 0
chr2:72944490|72944610 hsa-miR-4538 1 0 0
chr2:72944490|72944610 hsa-miR-4651 1 0 0
chr2:72944490|72944610 hsa-miR-4656 1 0 0
chr2:72944490|72944610 hsa-miR-4673 1 0 0
chr2:72944490|72944610 hsa-miR-4741 1 0 0
chr2:72944490|72944610 hsa-miR-5787 1 0 0
chr2:72944490|72944610 hsa-miR-6069 1 0 0
chr2:72944490|72944610 hsa-miR-7150 1 0 0
chr2:72944490|72944610 hsa-miR-138-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6799-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6728-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6089 1 0 0
chr2:72944490|72944610 hsa-miR-6807-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4653-3p 1 0 0
chr2:72944490|72944610 hsa-miR-3677-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6842-3p 1 0 0
chr2:72944490|72944610 hsa-miR-6829-5p 1 0 0
chr2:72944490|72944610 hsa-miR-3944-3p 1 0 0
chr2:72944490|72944610 hsa-miR-1229-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6784-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4640-5p 1 0 0
chr2:72944490|72944610 hsa-miR-296-3p 1 0 0
chr2:72944490|72944610 hsa-miR-6823-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6749-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6501-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4446-3p 1 0 0
chr2:72944490|72944610 hsa-miR-5001-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6737-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6756-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6769a-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6803-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6819-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6851-5p 1 0 0
chr2:72944490|72944610 hsa-miR-7107-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6751-5p 1 0 0
chr2:72944490|72944610 hsa-miR-3620-5p 1 0 0
chr2:72944490|72944610 hsa-miR-10396b-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4685-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4726-5p 1 0 0
chr2:72944490|72944610 hsa-miR-4745-5p 1 0 0
chr2:72944490|72944610 hsa-miR-3940-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6724-5p 1 0 0
chr2:72944490|72944610 hsa-miR-6791-5p 1 0 0
chr2:72944490|72944610 hsa-miR-10400-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:72944490|72944610
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MPAQGAIWAGHCNILNLPAWPPNQPNSRPNLARLH
Nucleotide Sequence ATGCCAGCCCAGGGAGCCATCTGGGCTGGCCATTGTAATATCCTAAATTTACCAGCCTGGCCACCAAACCAGCCCAACTCCAGGCCTAATCTGGCTCGCCTCCAC
CircID chr2:72944490|72944610
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MELGWFGGQAGKFRILQWPAQMAPWAGMGRGEK
Nucleotide Sequence CTGGAGTTGGGCTGGTTTGGTGGCCAGGCTGGTAAATTTAGGATATTACAATGGCCAGCCCAGATGGCTCCCTGGGCTGGCATGGGGAGGGGAGAGAAG
CircID chr2:72944490|72944610
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MVARLVNLGYYNGQPRWLPGLAWGGER
Nucleotide Sequence TTGGTGGCCAGGCTGGTAAATTTAGGATATTACAATGGCCAGCCCAGATGGCTCCCTGGGCTGGCATGGGGAGGGGAGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab