CircRNA Information

General Information
circRNA Basic Information
CircID chr2:73729597|73729838
Strand -
CircType exon
Host Gene ENSG00000144034.13;
Algorism CIRI2;
Sequence CTGTGCCTCCCAGGTTCATGCGATTCTCCTGTCTCAGCCTCCCGAATAGCTGGGATTACAGGCACCTGCCATCATGCCCAGCTAATTTTTGTATTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAATTGCTGGGATTTCAGGCGTGAGCCACCGTGCCTGGCCTTTTTTTTTTTTTTTTAATACCATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:73729597|73729838 hsa-miR-564 0 1 1
chr2:73729597|73729838 hsa-miR-605-5p 0 0 1
chr2:73729597|73729838 hsa-miR-605-3p 0 0 1
chr2:73729597|73729838 hsa-miR-612 0 0 1
chr2:73729597|73729838 hsa-miR-650 0 0 1
chr2:73729597|73729838 hsa-miR-940 0 0 1
chr2:73729597|73729838 hsa-miR-485-5p 0 1 1
chr2:73729597|73729838 hsa-miR-490-3p 0 0 1
chr2:73729597|73729838 hsa-miR-1207-5p 1 0 1
chr2:73729597|73729838 hsa-miR-550 0 0 1
chr2:73729597|73729838 hsa-miR-1285 0 0 1
chr2:73729597|73729838 hsa-miR-24 0 0 1
chr2:73729597|73729838 hsa-miR-638 1 0 0
chr2:73729597|73729838 hsa-miR-1268a 1 1 0
chr2:73729597|73729838 hsa-miR-544b 0 1 0
chr2:73729597|73729838 hsa-miR-3147 1 1 0
chr2:73729597|73729838 hsa-miR-4298 1 1 0
chr2:73729597|73729838 hsa-miR-4259 1 0 0
chr2:73729597|73729838 hsa-miR-3714 0 1 0
chr2:73729597|73729838 hsa-miR-3929 0 1 0
chr2:73729597|73729838 hsa-miR-1268b 1 1 0
chr2:73729597|73729838 hsa-miR-3689c 0 1 0
chr2:73729597|73729838 hsa-miR-4505 1 0 0
chr2:73729597|73729838 hsa-miR-4656 1 1 0
chr2:73729597|73729838 hsa-miR-4736 0 1 0
chr2:73729597|73729838 hsa-miR-4739 1 0 0
chr2:73729597|73729838 hsa-miR-4794 0 1 0
chr2:73729597|73729838 hsa-miR-5787 1 0 0
chr2:73729597|73729838 hsa-miR-6860 0 1 0
chr2:73729597|73729838 hsa-miR-12114 0 1 0
chr2:73729597|73729838 hsa-miR-150-3p 1 0 0
chr2:73729597|73729838 hsa-miR-7106-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6894-5p 1 0 0
chr2:73729597|73729838 hsa-miR-1972 1 1 0
chr2:73729597|73729838 hsa-miR-6799-5p 1 0 0
chr2:73729597|73729838 hsa-miR-3622a-5p 0 1 0
chr2:73729597|73729838 hsa-miR-7851-3p 0 1 0
chr2:73729597|73729838 hsa-miR-6089 1 0 0
chr2:73729597|73729838 hsa-miR-3192-5p 1 1 0
chr2:73729597|73729838 hsa-miR-6746-5p 1 0 0
chr2:73729597|73729838 hsa-miR-3189-5p 1 0 0
chr2:73729597|73729838 hsa-miR-7845-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6798-5p 1 0 0
chr2:73729597|73729838 hsa-miR-2467-3p 1 0 0
chr2:73729597|73729838 hsa-miR-7855-5p 1 0 0
chr2:73729597|73729838 hsa-miR-30b-3p 0 1 0
chr2:73729597|73729838 hsa-miR-5006-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6514-3p 0 1 0
chr2:73729597|73729838 hsa-miR-1228-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6771-5p 1 1 0
chr2:73729597|73729838 hsa-miR-149-3p 1 0 0
chr2:73729597|73729838 hsa-miR-6895-5p 0 1 0
chr2:73729597|73729838 hsa-miR-302c-5p 0 1 0
chr2:73729597|73729838 hsa-miR-3680-3p 1 1 0
chr2:73729597|73729838 hsa-miR-1233-5p 1 1 0
chr2:73729597|73729838 hsa-miR-1273h-5p 1 1 0
chr2:73729597|73729838 hsa-miR-3689b-3p 0 1 0
chr2:73729597|73729838 hsa-miR-6778-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6893-5p 0 1 0
chr2:73729597|73729838 hsa-miR-6775-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6751-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6779-5p 0 1 0
chr2:73729597|73729838 hsa-miR-6780a-5p 1 1 0
chr2:73729597|73729838 hsa-miR-3620-5p 1 0 0
chr2:73729597|73729838 hsa-miR-4728-5p 1 0 0
chr2:73729597|73729838 hsa-miR-5189-5p 0 1 0
chr2:73729597|73729838 hsa-miR-6862-5p 0 1 0
chr2:73729597|73729838 hsa-miR-328-5p 1 0 0
chr2:73729597|73729838 hsa-miR-3689a-3p 0 1 0
chr2:73729597|73729838 hsa-miR-4685-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6846-5p 1 0 0
chr2:73729597|73729838 hsa-miR-6848-5p 1 1 0
chr2:73729597|73729838 hsa-miR-3187-5p 0 1 0
chr2:73729597|73729838 hsa-miR-939-5p 1 0 0
chr2:73729597|73729838 hsa-miR-1271-3p 0 1 0
chr2:73729597|73729838 hsa-miR-6884-5p 1 1 0
chr2:73729597|73729838 hsa-miR-6715b-5p 0 1 0
chr2:73729597|73729838 hsa-miR-3622b-3p 0 1 0
chr2:73729597|73729838 hsa-miR-6771-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:73729597|73729838
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence LCLPGSCDSPVSASRIAGITGTCHHAQLIFVF
Nucleotide Sequence CTGTGCCTCCCAGGTTCATGCGATTCTCCTGTCTCAGCCTCCCGAATAGCTGGGATTACAGGCACCTGCCATCATGCCCAGCTAATTTTTGTATTTTAG
CircID chr2:73729597|73729838
ORF Type ORF2
Protein Length 75
Nucleotide Length 225
Protein Sequence MRFSCLSLPNSWDYRHLPSCPANFCILVEMGFHHVSQAGLELLTSGDPPALASQIAGISGVSHRAWPFFFFFNTI
Nucleotide Sequence ATGCGATTCTCCTGTCTCAGCCTCCCGAATAGCTGGGATTACAGGCACCTGCCATCATGCCCAGCTAATTTTTGTATTTTAGTAGAGATGGGGTTTCACCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAATTGCTGGGATTTCAGGCGTGAGCCACCGTGCCTGGCCTTTTTTTTTTTTTTTTAATACCATT
CircID chr2:73729597|73729838
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MVLKKKKKGQARWLTPEIPAIWEAKAGGSPEVRSSRPAWLTW
Nucleotide Sequence ATGGTATTAAAAAAAAAAAAAAAAGGCCAGGCACGGTGGCTCACGCCTGAAATCCCAGCAATTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCTAACATGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab