CircRNA Information

General Information
circRNA Basic Information
CircID chr2:74492197|74492418
Strand -
CircType exon
Host Gene ENSG00000115282.18;
Algorism CIRI2;
Sequence CCAGGCCTTGAAGCTCAACCCCCAGGACCACCGGTAGGTGGGGGCTTGGCCAGGGCAGGGCAGAGTGTTGAGGACTCAGACCTTTGGCCACCTTCTGTCTTTATCAGGTTATTTGGAAATCGTTCCTTCTGCCATGAGCGGTTGGGTCAGCCAGCGTGGGCCCTGGCTGATGCCCAGGTGGCCCTTACCCTACGGCCTGGCTGGCCCCGGGGCCTCTTCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:74492197|74492418 hsa-miR-555 0 0 1
chr2:74492197|74492418 hsa-miR-612 0 0 1
chr2:74492197|74492418 hsa-miR-637 0 0 1
chr2:74492197|74492418 hsa-miR-649 0 0 1
chr2:74492197|74492418 hsa-miR-298 0 0 1
chr2:74492197|74492418 hsa-miR-874-5p 0 0 1
chr2:74492197|74492418 hsa-miR-874-3p 0 0 1
chr2:74492197|74492418 hsa-miR-1252-5p 0 0 1
chr2:74492197|74492418 hsa-miR-1252-3p 0 0 1
chr2:74492197|74492418 hsa-miR-146b-3p 0 0 1
chr2:74492197|74492418 hsa-miR-490-3p 0 0 1
chr2:74492197|74492418 hsa-miR-1224-3p 0 0 1
chr2:74492197|74492418 hsa-miR-324-3p 0 0 1
chr2:74492197|74492418 hsa-miR-323-5p 0 0 1
chr2:74492197|74492418 hsa-miR-1285 0 0 1
chr2:74492197|74492418 hsa-miR-661 1 0 0
chr2:74492197|74492418 hsa-miR-762 1 0 0
chr2:74492197|74492418 hsa-miR-663b 1 0 0
chr2:74492197|74492418 hsa-miR-548s 0 1 0
chr2:74492197|74492418 hsa-miR-3161 0 1 0
chr2:74492197|74492418 hsa-miR-3943 0 1 0
chr2:74492197|74492418 hsa-miR-1268b 1 0 0
chr2:74492197|74492418 hsa-miR-4449 1 1 0
chr2:74492197|74492418 hsa-miR-4739 1 0 0
chr2:74492197|74492418 hsa-miR-5090 1 0 0
chr2:74492197|74492418 hsa-miR-12120 1 1 0
chr2:74492197|74492418 hsa-miR-4435 0 1 0
chr2:74492197|74492418 hsa-miR-18a-3p 0 1 0
chr2:74492197|74492418 hsa-miR-3157-5p 0 1 0
chr2:74492197|74492418 hsa-miR-6089 1 0 0
chr2:74492197|74492418 hsa-miR-3677-5p 1 0 0
chr2:74492197|74492418 hsa-miR-4755-3p 0 1 0
chr2:74492197|74492418 hsa-miR-6742-5p 0 1 0
chr2:74492197|74492418 hsa-miR-4711-5p 0 1 0
chr2:74492197|74492418 hsa-miR-1292-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6765-3p 0 1 0
chr2:74492197|74492418 hsa-miR-3194-5p 0 1 0
chr2:74492197|74492418 hsa-miR-6728-3p 0 1 0
chr2:74492197|74492418 hsa-miR-5008-5p 1 1 0
chr2:74492197|74492418 hsa-miR-6852-5p 0 1 0
chr2:74492197|74492418 hsa-miR-939-3p 0 1 0
chr2:74492197|74492418 hsa-miR-1908-3p 1 0 0
chr2:74492197|74492418 hsa-miR-6784-5p 1 0 0
chr2:74492197|74492418 hsa-miR-4640-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6789-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6781-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6752-3p 0 1 0
chr2:74492197|74492418 hsa-miR-4750-3p 0 1 0
chr2:74492197|74492418 hsa-miR-6816-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6865-5p 1 1 0
chr2:74492197|74492418 hsa-miR-6775-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6803-5p 1 1 0
chr2:74492197|74492418 hsa-miR-6815-5p 0 1 0
chr2:74492197|74492418 hsa-miR-6851-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6751-5p 1 1 0
chr2:74492197|74492418 hsa-miR-5189-5p 0 1 0
chr2:74492197|74492418 hsa-miR-4632-5p 1 0 0
chr2:74492197|74492418 hsa-miR-4726-5p 0 1 0
chr2:74492197|74492418 hsa-miR-6735-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6848-5p 1 0 0
chr2:74492197|74492418 hsa-miR-4633-3p 1 0 0
chr2:74492197|74492418 hsa-miR-10396a-3p 0 1 0
chr2:74492197|74492418 hsa-miR-10396b-3p 0 1 0
chr2:74492197|74492418 hsa-miR-6799-3p 0 1 0
chr2:74492197|74492418 hsa-miR-6736-5p 1 0 0
chr2:74492197|74492418 hsa-miR-6791-5p 1 1 0
chr2:74492197|74492418 hsa-miR-6753-3p 1 0 0
chr2:74492197|74492418 hsa-miR-7107-3p 1 0 0
chr2:74492197|74492418 hsa-miR-6762-5p 1 1 0
chr2:74492197|74492418 hsa-miR-6805-3p 0 1 0
chr2:74492197|74492418 hsa-miR-3085-3p 0 1 0
chr2:74492197|74492418 hsa-miR-4662a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:74492197|74492418
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MARAGQSVEDSDLWPPSVFIRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFR
Nucleotide Sequence TTGGCCAGGGCAGGGCAGAGTGTTGAGGACTCAGACCTTTGGCCACCTTCTGTCTTTATCAGGTTATTTGGAAATCGTTCCTTCTGCCATGAGCGGTTGGGTCAGCCAGCGTGGGCCCTGGCTGATGCCCAGGTGGCCCTTACCCTACGGCCTGGCTGGCCCCGGGGCCTCTTCCGC
CircID chr2:74492197|74492418
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MRTQTFGHLLSLSGYLEIVPSAMSGWVSQRGPWLMPRWPLPYGLAGPGASS
Nucleotide Sequence TTGAGGACTCAGACCTTTGGCCACCTTCTGTCTTTATCAGGTTATTTGGAAATCGTTCCTTCTGCCATGAGCGGTTGGGTCAGCCAGCGTGGGCCCTGGCTGATGCCCAGGTGGCCCTTACCCTACGGCCTGGCTGGCCCCGGGGCCTCTTCC
CircID chr2:74492197|74492418
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MIKTEGGQRSESSTLCPALAKPPPTGGPGG
Nucleotide Sequence CTGATAAAGACAGAAGGTGGCCAAAGGTCTGAGTCCTCAACACTCTGCCCTGCCCTGGCCAAGCCCCCACCTACCGGTGGTCCTGGGGGTTGA
CircID chr2:74492197|74492418
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MSPQHSALPWPSPHLPVVLGVELQGL
Nucleotide Sequence CTGAGTCCTCAACACTCTGCCCTGCCCTGGCCAAGCCCCCACCTACCGGTGGTCCTGGGGGTTGAGCTTCAAGGCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab