CircRNA Information

General Information
circRNA Basic Information
CircID chr2:85542275|85542634
Strand +
CircType exon
Host Gene ENSG00000168906.11;
Algorism CIRI2;
Sequence CTCCTCCATGAGCACCCCAACCGCCATAAGTGTCCACAATGATTTTGCGTCCAGTCAAACCAGCATCACCCTGAAATTACAGGATTTAAGTTACTTTACGCCTAGTGCTTTCCAAGTGGATTAGGTTGCCTATTCTGAATTCATTCAGCAAATATCCTCCGATGATTCACATGTAGGTTTCAGAAAGCCTGAAAAAAATGTAGTAGCCAAAATTTTAAGTAACCATCAAAAATCCAGAAAAATGCAACAAAATGACATTACCTGAGGCCCACCAATAACAAATCTGCCACTTGGCTGTAGGTGGTAGATTGTATCCTCATCAAGGTATTTCGCAGGCACAACTGCTTTGATGACTTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:85542275|85542634 hsa-miR-33a-5p 0 0 1
chr2:85542275|85542634 hsa-miR-33a-3p 0 0 1
chr2:85542275|85542634 hsa-miR-484 0 0 1
chr2:85542275|85542634 hsa-miR-559 0 0 1
chr2:85542275|85542634 hsa-miR-605-5p 0 0 1
chr2:85542275|85542634 hsa-miR-605-3p 0 0 1
chr2:85542275|85542634 hsa-miR-608 0 0 1
chr2:85542275|85542634 hsa-miR-616-5p 0 0 1
chr2:85542275|85542634 hsa-miR-616-3p 0 0 1
chr2:85542275|85542634 hsa-miR-33b-5p 0 0 1
chr2:85542275|85542634 hsa-miR-33b-3p 0 0 1
chr2:85542275|85542634 hsa-miR-652-5p 0 0 1
chr2:85542275|85542634 hsa-miR-652-3p 0 0 1
chr2:85542275|85542634 hsa-miR-765 0 0 1
chr2:85542275|85542634 hsa-miR-890 0 1 1
chr2:85542275|85542634 hsa-miR-541-5p 0 0 1
chr2:85542275|85542634 hsa-miR-541-3p 0 0 1
chr2:85542275|85542634 hsa-miR-943 0 0 1
chr2:85542275|85542634 hsa-miR-548j-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548j-3p 0 0 1
chr2:85542275|85542634 hsa-miR-1290 0 0 1
chr2:85542275|85542634 hsa-miR-548k 0 0 1
chr2:85542275|85542634 hsa-miR-1299 0 0 1
chr2:85542275|85542634 hsa-miR-548l 0 0 1
chr2:85542275|85542634 hsa-miR-1257 0 0 1
chr2:85542275|85542634 hsa-miR-486-5p 0 0 1
chr2:85542275|85542634 hsa-miR-654-5p 1 1 1
chr2:85542275|85542634 hsa-miR-330-3p 0 1 1
chr2:85542275|85542634 hsa-miR-409-5p 0 0 1
chr2:85542275|85542634 hsa-miR-490-5p 0 0 1
chr2:85542275|85542634 hsa-miR-628-5p 0 0 1
chr2:85542275|85542634 hsa-miR-342-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548b-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548d-5p 0 0 1
chr2:85542275|85542634 hsa-miR-876-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548c-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548a-5p 0 0 1
chr2:85542275|85542634 hsa-miR-548i 0 0 1
chr2:85542275|85542634 hsa-miR-550 0 0 1
chr2:85542275|85542634 hsa-miR-138 0 0 1
chr2:85542275|85542634 hsa-miR-516b 0 0 1
chr2:85542275|85542634 hsa-miR-1185 0 0 1
chr2:85542275|85542634 hsa-miR-548h 0 0 1
chr2:85542275|85542634 hsa-miR-1293 1 0 0
chr2:85542275|85542634 hsa-miR-3138 1 1 0
chr2:85542275|85542634 hsa-miR-4322 1 0 0
chr2:85542275|85542634 hsa-miR-3911 0 1 0
chr2:85542275|85542634 hsa-miR-4464 0 1 0
chr2:85542275|85542634 hsa-miR-4480 0 1 0
chr2:85542275|85542634 hsa-miR-4525 1 0 0
chr2:85542275|85542634 hsa-miR-1587 1 0 0
chr2:85542275|85542634 hsa-miR-3978 1 1 0
chr2:85542275|85542634 hsa-miR-5572 0 1 0
chr2:85542275|85542634 hsa-miR-5787 1 0 0
chr2:85542275|85542634 hsa-miR-6125 1 0 0
chr2:85542275|85542634 hsa-miR-6765-5p 1 0 0
chr2:85542275|85542634 hsa-miR-4687-3p 1 0 0
chr2:85542275|85542634 hsa-miR-3692-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6833-5p 1 0 0
chr2:85542275|85542634 hsa-miR-8069 1 0 0
chr2:85542275|85542634 hsa-miR-6715b-3p 0 1 0
chr2:85542275|85542634 hsa-miR-6786-5p 1 0 0
chr2:85542275|85542634 hsa-miR-1226-5p 1 0 0
chr2:85542275|85542634 hsa-miR-185-5p 1 0 0
chr2:85542275|85542634 hsa-miR-550b-2-5p 0 1 0
chr2:85542275|85542634 hsa-miR-7850-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6715a-3p 0 1 0
chr2:85542275|85542634 hsa-miR-4704-5p 1 0 0
chr2:85542275|85542634 hsa-miR-196a-5p 0 1 0
chr2:85542275|85542634 hsa-miR-6769b-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6812-5p 0 1 0
chr2:85542275|85542634 hsa-miR-6865-5p 1 0 0
chr2:85542275|85542634 hsa-miR-5001-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6756-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6803-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6751-5p 1 0 0
chr2:85542275|85542634 hsa-miR-3620-5p 1 0 0
chr2:85542275|85542634 hsa-miR-5189-5p 1 0 0
chr2:85542275|85542634 hsa-miR-6731-5p 1 0 0
chr2:85542275|85542634 hsa-miR-1271-3p 0 1 0
chr2:85542275|85542634 hsa-miR-6849-5p 1 0 0
chr2:85542275|85542634 hsa-miR-550a-3-5p 0 1 0
chr2:85542275|85542634 hsa-miR-550a-5p 0 1 0
chr2:85542275|85542634 hsa-miR-196b-5p 0 1 0
chr2:85542275|85542634 hsa-miR-892c-5p 0 1 0
chr2:85542275|85542634 hsa-let-7f-1-3p 0 1 0
chr2:85542275|85542634 hsa-let-7a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:85542275|85542634
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MSTPTAISVHNDFASSQTSITLKLQDLSYFTPSAFQVD
Nucleotide Sequence ATGAGCACCCCAACCGCCATAAGTGTCCACAATGATTTTGCGTCCAGTCAAACCAGCATCACCCTGAAATTACAGGATTTAAGTTACTTTACGCCTAGTGCTTTCCAAGTGGATTAG
CircID chr2:85542275|85542634
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MCLRNTLMRIQSTTYSQVADLLLVGLR
Nucleotide Sequence TTGTGCCTGCGAAATACCTTGATGAGGATACAATCTACCACCTACAGCCAAGTGGCAGATTTGTTATTGGTGGGCCTCAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab