CircRNA Information

General Information
circRNA Basic Information
CircID chr2:85543237|85543404
Strand +
CircType exon
Host Gene ENSG00000168906.11;
Algorism CIRI2;
Sequence CTGAGATCACACAATACTTACCAAGGTCCCGCCGCCCACACCCTACCATGGTTTTTACATTGCAACAAACCTTGAGCAACCCACTTTATCTCTATTTTCTTAACACCCTTAAGTAGAAGAGCACAAAGCTCAAATATCAAATCTGGAACATTCTCTAGAGTGGTTAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:85543237|85543404 hsa-miR-17-5p 0 0 1
chr2:85543237|85543404 hsa-miR-17-3p 0 0 1
chr2:85543237|85543404 hsa-miR-20a-5p 0 0 1
chr2:85543237|85543404 hsa-miR-20a-3p 0 0 1
chr2:85543237|85543404 hsa-miR-93-5p 0 0 1
chr2:85543237|85543404 hsa-miR-93-3p 0 0 1
chr2:85543237|85543404 hsa-miR-106a-5p 0 0 1
chr2:85543237|85543404 hsa-miR-106a-3p 0 0 1
chr2:85543237|85543404 hsa-miR-106b-5p 0 0 1
chr2:85543237|85543404 hsa-miR-106b-3p 0 0 1
chr2:85543237|85543404 hsa-miR-20b-5p 0 0 1
chr2:85543237|85543404 hsa-miR-20b-3p 0 0 1
chr2:85543237|85543404 hsa-miR-519d-5p 0 0 1
chr2:85543237|85543404 hsa-miR-519d-3p 0 0 1
chr2:85543237|85543404 hsa-miR-577 0 0 1
chr2:85543237|85543404 hsa-miR-609 0 0 1
chr2:85543237|85543404 hsa-miR-1178-5p 0 0 1
chr2:85543237|85543404 hsa-miR-1178-3p 0 0 1
chr2:85543237|85543404 hsa-miR-142-5p 0 0 1
chr2:85543237|85543404 hsa-miR-525-5p 0 0 1
chr2:85543237|85543404 hsa-miR-518d-5p 0 0 1
chr2:85543237|85543404 hsa-miR-519b-5p 0 0 1
chr2:85543237|85543404 hsa-miR-519c-5p 0 0 1
chr2:85543237|85543404 hsa-miR-520a-5p 0 0 1
chr2:85543237|85543404 hsa-miR-520c-5p 0 0 1
chr2:85543237|85543404 hsa-miR-548d-3p 0 0 1
chr2:85543237|85543404 hsa-miR-218 0 0 1
chr2:85543237|85543404 hsa-miR-526a 0 0 1
chr2:85543237|85543404 hsa-miR-147 0 0 1
chr2:85543237|85543404 hsa-miR-663a 1 0 0
chr2:85543237|85543404 hsa-miR-658 1 0 0
chr2:85543237|85543404 hsa-miR-1268a 1 0 0
chr2:85543237|85543404 hsa-miR-3196 1 0 0
chr2:85543237|85543404 hsa-miR-1268b 1 0 0
chr2:85543237|85543404 hsa-miR-4466 1 0 0
chr2:85543237|85543404 hsa-miR-4467 1 1 0
chr2:85543237|85543404 hsa-miR-4481 1 0 0
chr2:85543237|85543404 hsa-miR-4488 1 0 0
chr2:85543237|85543404 hsa-miR-4507 1 0 0
chr2:85543237|85543404 hsa-miR-3960 1 0 0
chr2:85543237|85543404 hsa-miR-4651 1 0 0
chr2:85543237|85543404 hsa-miR-4710 1 0 0
chr2:85543237|85543404 hsa-miR-6088 1 0 0
chr2:85543237|85543404 hsa-miR-8072 1 1 0
chr2:85543237|85543404 hsa-miR-6747-5p 1 0 0
chr2:85543237|85543404 hsa-miR-4653-3p 1 0 0
chr2:85543237|85543404 hsa-miR-7108-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6748-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6772-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6793-5p 1 1 0
chr2:85543237|85543404 hsa-miR-6796-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6732-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6782-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6786-5p 1 0 0
chr2:85543237|85543404 hsa-miR-193b-5p 1 0 0
chr2:85543237|85543404 hsa-miR-885-3p 1 0 0
chr2:85543237|85543404 hsa-miR-1228-5p 1 0 0
chr2:85543237|85543404 hsa-miR-3162-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6802-5p 1 0 0
chr2:85543237|85543404 hsa-miR-4684-3p 1 1 0
chr2:85543237|85543404 hsa-miR-514a-5p 0 1 0
chr2:85543237|85543404 hsa-miR-10400-5p 1 1 0
chr2:85543237|85543404 hsa-miR-1233-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6769b-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6778-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6812-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6816-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6737-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6752-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6756-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6803-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6819-5p 1 0 0
chr2:85543237|85543404 hsa-miR-7110-5p 1 0 0
chr2:85543237|85543404 hsa-miR-10401-5p 1 1 0
chr2:85543237|85543404 hsa-miR-6763-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6779-5p 1 0 0
chr2:85543237|85543404 hsa-miR-10396b-5p 1 0 0
chr2:85543237|85543404 hsa-miR-1237-5p 1 0 0
chr2:85543237|85543404 hsa-miR-4745-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6795-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6883-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6887-5p 1 0 0
chr2:85543237|85543404 hsa-miR-4758-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6855-5p 1 0 0
chr2:85543237|85543404 hsa-miR-6762-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:85543237|85543404
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MIFELCALLLKGVKKIEIKWVAQGLLQCKNHGRVWAAGPW
Nucleotide Sequence TTGATATTTGAGCTTTGTGCTCTTCTACTTAAGGGTGTTAAGAAAATAGAGATAAAGTGGGTTGCTCAAGGTTTGTTGCAATGTAAAAACCATGGTAGGGTGTGGGCGGCGGGACCTTGGTAA
CircID chr2:85543237|85543404
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MLKVCCNVKTMVGCGRRDLGKYCVIS
Nucleotide Sequence TTGCTCAAGGTTTGTTGCAATGTAAAAACCATGGTAGGGTGTGGGCGGCGGGACCTTGGTAAGTATTGTGTGATCTCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab