CircRNA Information

General Information
circRNA Basic Information
CircID chr2:85648811|85649089
Strand +
CircType exon
Host Gene ENSG00000168883.18;
Algorism CIRI2;
Sequence ACACATCTGGAGAAGGGTTCTGCCCTGCTGAAGCTAGATGGGAGCTCAATGCATGGGAGAAAGGAGCATCAATCTAGAAAAAAATGATCAAAGAACAGCTGAGTGACAGTGTGGGGCCATCCCAGGCAAGTGGGCTCTTGGTGCTCTGGTGTAGCCAGAACCCATACAAGCTGGGCTGGCCTAGGAAGCCCACCAGCCAGCCTGTGTTCAGCTACAGCTTCTGTGTTCTTATTTACCATCATCAGCCACAGCCCTTGGGAGCAAAGCCCTAGACGCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:85648811|85649089 hsa-miR-29a-5p 0 0 1
chr2:85648811|85649089 hsa-miR-29a-3p 0 0 1
chr2:85648811|85649089 hsa-miR-33a-5p 0 0 1
chr2:85648811|85649089 hsa-miR-33a-3p 0 0 1
chr2:85648811|85649089 hsa-miR-214-5p 0 0 1
chr2:85648811|85649089 hsa-miR-214-3p 0 0 1
chr2:85648811|85649089 hsa-miR-149-5p 0 0 1
chr2:85648811|85649089 hsa-miR-149-3p 0 0 1
chr2:85648811|85649089 hsa-miR-150-5p 0 0 1
chr2:85648811|85649089 hsa-miR-150-3p 0 0 1
chr2:85648811|85649089 hsa-miR-29c-5p 0 0 1
chr2:85648811|85649089 hsa-miR-29c-3p 0 0 1
chr2:85648811|85649089 hsa-miR-335-5p 0 0 1
chr2:85648811|85649089 hsa-miR-335-3p 0 0 1
chr2:85648811|85649089 hsa-miR-384 0 0 1
chr2:85648811|85649089 hsa-miR-586 0 0 1
chr2:85648811|85649089 hsa-miR-33b-5p 0 0 1
chr2:85648811|85649089 hsa-miR-33b-3p 0 0 1
chr2:85648811|85649089 hsa-miR-643 0 0 1
chr2:85648811|85649089 hsa-miR-661 1 0 1
chr2:85648811|85649089 hsa-miR-668-5p 0 0 1
chr2:85648811|85649089 hsa-miR-668-3p 0 0 1
chr2:85648811|85649089 hsa-miR-766-5p 0 0 1
chr2:85648811|85649089 hsa-miR-766-3p 0 0 1
chr2:85648811|85649089 hsa-miR-541-5p 0 0 1
chr2:85648811|85649089 hsa-miR-541-3p 0 0 1
chr2:85648811|85649089 hsa-miR-922 0 0 1
chr2:85648811|85649089 hsa-miR-297 0 0 1
chr2:85648811|85649089 hsa-miR-512-5p 0 0 1
chr2:85648811|85649089 hsa-miR-532-3p 0 0 1
chr2:85648811|85649089 hsa-miR-654-5p 0 0 1
chr2:85648811|85649089 hsa-miR-1207-3p 0 0 1
chr2:85648811|85649089 hsa-miR-576-3p 0 0 1
chr2:85648811|85649089 hsa-miR-518d-5p 0 0 1
chr2:85648811|85649089 hsa-miR-519b-5p 0 0 1
chr2:85648811|85649089 hsa-miR-519c-5p 0 0 1
chr2:85648811|85649089 hsa-miR-520c-5p 0 0 1
chr2:85648811|85649089 hsa-miR-515-5p 0 0 1
chr2:85648811|85649089 hsa-miR-516a-3p 0 0 1
chr2:85648811|85649089 hsa-miR-548b-3p 0 0 1
chr2:85648811|85649089 hsa-miR-138 0 0 1
chr2:85648811|85649089 hsa-miR-1254 0 0 1
chr2:85648811|85649089 hsa-miR-526a 0 0 1
chr2:85648811|85649089 hsa-miR-1826 0 0 1
chr2:85648811|85649089 hsa-miR-29b 0 0 1
chr2:85648811|85649089 hsa-miR-762 1 0 0
chr2:85648811|85649089 hsa-miR-940 1 0 0
chr2:85648811|85649089 hsa-miR-1256 1 0 0
chr2:85648811|85649089 hsa-miR-3929 1 0 0
chr2:85648811|85649089 hsa-miR-3936 1 0 0
chr2:85648811|85649089 hsa-miR-4487 1 0 0
chr2:85648811|85649089 hsa-miR-4498 1 0 0
chr2:85648811|85649089 hsa-miR-4508 1 0 0
chr2:85648811|85649089 hsa-miR-4539 1 0 0
chr2:85648811|85649089 hsa-miR-4647 1 0 0
chr2:85648811|85649089 hsa-miR-4656 1 0 0
chr2:85648811|85649089 hsa-miR-4675 1 0 0
chr2:85648811|85649089 hsa-miR-4721 1 0 0
chr2:85648811|85649089 hsa-miR-4741 1 0 0
chr2:85648811|85649089 hsa-miR-5787 1 0 0
chr2:85648811|85649089 hsa-miR-6085 1 0 0
chr2:85648811|85649089 hsa-miR-7974 1 0 0
chr2:85648811|85649089 hsa-miR-138-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6747-5p 1 0 0
chr2:85648811|85649089 hsa-miR-4687-3p 1 0 0
chr2:85648811|85649089 hsa-miR-1225-3p 1 0 0
chr2:85648811|85649089 hsa-miR-4474-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6759-5p 1 0 0
chr2:85648811|85649089 hsa-miR-8069 1 0 0
chr2:85648811|85649089 hsa-miR-6787-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6742-5p 1 0 0
chr2:85648811|85649089 hsa-miR-28-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6793-5p 1 0 0
chr2:85648811|85649089 hsa-miR-185-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6829-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6732-5p 1 0 0
chr2:85648811|85649089 hsa-miR-4713-5p 1 0 0
chr2:85648811|85649089 hsa-miR-5088-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6784-5p 1 0 0
chr2:85648811|85649089 hsa-miR-296-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6739-3p 1 0 0
chr2:85648811|85649089 hsa-miR-4446-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6814-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6837-3p 1 0 0
chr2:85648811|85649089 hsa-miR-758-5p 1 0 0
chr2:85648811|85649089 hsa-miR-2116-3p 1 0 0
chr2:85648811|85649089 hsa-miR-5001-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6752-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6813-5p 1 0 0
chr2:85648811|85649089 hsa-miR-7110-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6774-5p 1 0 0
chr2:85648811|85649089 hsa-miR-1266-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6511a-5p 1 0 0
chr2:85648811|85649089 hsa-miR-5008-3p 1 0 0
chr2:85648811|85649089 hsa-miR-7843-5p 1 0 0
chr2:85648811|85649089 hsa-miR-7151-3p 1 0 0
chr2:85648811|85649089 hsa-miR-6791-5p 1 0 0
chr2:85648811|85649089 hsa-miR-550a-5p 1 0 0
chr2:85648811|85649089 hsa-miR-6884-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:85648811|85649089
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MEKGSALLKLDGSSMHGRKEHQSRKK
Nucleotide Sequence CTGGAGAAGGGTTCTGCCCTGCTGAAGCTAGATGGGAGCTCAATGCATGGGAGAAAGGAGCATCAATCTAGAAAAAAATGA
CircID chr2:85648811|85649089
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MCSATASVFLFTIISHSPWEQSPRRL
Nucleotide Sequence CTGTGTTCAGCTACAGCTTCTGTGTTCTTATTTACCATCATCAGCCACAGCCCTTGGGAGCAAAGCCCTAGACGCCTC
CircID chr2:85648811|85649089
ORF Type ORF3
Protein Length 62
Nucleotide Length 189
Protein Sequence MIKEQLSDSVGPSQASGLLVLWCSQNPYKLGWPRKPTSQPVFSYSFCVLIYHHQPQPLGAKP
Nucleotide Sequence ATGATCAAAGAACAGCTGAGTGACAGTGTGGGGCCATCCCAGGCAAGTGGGCTCTTGGTGCTCTGGTGTAGCCAGAACCCATACAAGCTGGGCTGGCCTAGGAAGCCCACCAGCCAGCCTGTGTTCAGCTACAGCTTCTGTGTTCTTATTTACCATCATCAGCCACAGCCCTTGGGAGCAAAGCCCTAG
CircID chr2:85648811|85649089
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MGSGYTRAPRAHLPGMAPHCHSAVL
Nucleotide Sequence ATGGGTTCTGGCTACACCAGAGCACCAAGAGCCCACTTGCCTGGGATGGCCCCACACTGTCACTCAGCTGTTCTTTGA
CircID chr2:85648811|85649089
ORF Type ORF5
Protein Length 60
Nucleotide Length 183
Protein Sequence MWLMMVNKNTEAVAEHRLAGGLPRPAQLVWVLATPEHQEPTCLGWPHTVTQLFFDHFFLD
Nucleotide Sequence CTGTGGCTGATGATGGTAAATAAGAACACAGAAGCTGTAGCTGAACACAGGCTGGCTGGTGGGCTTCCTAGGCCAGCCCAGCTTGTATGGGTTCTGGCTACACCAGAGCACCAAGAGCCCACTTGCCTGGGATGGCCCCACACTGTCACTCAGCTGTTCTTTGATCATTTTTTTCTAGATTGA
CircID chr2:85648811|85649089
ORF Type ORF6
Protein Length 45
Nucleotide Length 138
Protein Sequence MNTGWLVGFLGQPSLYGFWLHQSTKSPLAWDGPTLSLSCSLIIFF
Nucleotide Sequence CTGAACACAGGCTGGCTGGTGGGCTTCCTAGGCCAGCCCAGCTTGTATGGGTTCTGGCTACACCAGAGCACCAAGAGCCCACTTGCCTGGGATGGCCCCACACTGTCACTCAGCTGTTCTTTGATCATTTTTTTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab