CircRNA Information

General Information
circRNA Basic Information
CircID chr2:8733461|8733680
Strand -
CircType exon
Host Gene ENSG00000134313.13;
Algorism CIRI2;
Sequence TGTGACGAGGGGCACCTTCATCCAGGCCAAGCGTGTTCAGCTCTTCGAAGCTGAAGTTGAGTGTGTAGGGCGTCTGGCTGGAGAGCTCGGTGTGAGGCAGCTCGTTGTGGGAAGCGCGGCGAGCAGGCTCACCGTGCGGGGCTGGGCCACTGCTGCTCTCACTGAGGAAACGTGGGTCTTCAGGGACCACGTGGCTTTCTGCGTTTCTCATTTCTAGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:8733461|8733680 hsa-miR-15a-5p 0 0 1
chr2:8733461|8733680 hsa-miR-15a-3p 0 0 1
chr2:8733461|8733680 hsa-miR-18a-5p 0 0 1
chr2:8733461|8733680 hsa-miR-18a-3p 0 0 1
chr2:8733461|8733680 hsa-miR-22-5p 0 0 1
chr2:8733461|8733680 hsa-miR-22-3p 0 0 1
chr2:8733461|8733680 hsa-miR-15b-5p 0 0 1
chr2:8733461|8733680 hsa-miR-15b-3p 0 0 1
chr2:8733461|8733680 hsa-miR-195-5p 0 0 1
chr2:8733461|8733680 hsa-miR-195-3p 0 0 1
chr2:8733461|8733680 hsa-miR-424-5p 0 0 1
chr2:8733461|8733680 hsa-miR-424-3p 0 0 1
chr2:8733461|8733680 hsa-miR-18b-5p 0 0 1
chr2:8733461|8733680 hsa-miR-18b-3p 0 0 1
chr2:8733461|8733680 hsa-miR-493-5p 0 0 1
chr2:8733461|8733680 hsa-miR-493-3p 0 0 1
chr2:8733461|8733680 hsa-miR-497-5p 0 0 1
chr2:8733461|8733680 hsa-miR-497-3p 0 0 1
chr2:8733461|8733680 hsa-miR-539-5p 0 0 1
chr2:8733461|8733680 hsa-miR-539-3p 0 0 1
chr2:8733461|8733680 hsa-miR-558 0 0 1
chr2:8733461|8733680 hsa-miR-596 0 1 1
chr2:8733461|8733680 hsa-miR-603 0 0 1
chr2:8733461|8733680 hsa-miR-662 1 0 1
chr2:8733461|8733680 hsa-miR-766-5p 0 0 1
chr2:8733461|8733680 hsa-miR-766-3p 0 0 1
chr2:8733461|8733680 hsa-miR-1228-5p 0 0 1
chr2:8733461|8733680 hsa-miR-1228-3p 0 0 1
chr2:8733461|8733680 hsa-miR-1238-5p 0 0 1
chr2:8733461|8733680 hsa-miR-1238-3p 0 0 1
chr2:8733461|8733680 hsa-miR-663b 1 1 1
chr2:8733461|8733680 hsa-miR-1255a 0 0 1
chr2:8733461|8733680 hsa-miR-28-3p 0 0 1
chr2:8733461|8733680 hsa-miR-188-3p 0 0 1
chr2:8733461|8733680 hsa-miR-125a-5p 0 0 1
chr2:8733461|8733680 hsa-miR-342-3p 0 1 1
chr2:8733461|8733680 hsa-miR-362-3p 0 0 1
chr2:8733461|8733680 hsa-miR-1260 0 0 1
chr2:8733461|8733680 hsa-miR-125b 0 0 1
chr2:8733461|8733680 hsa-miR-16 0 0 1
chr2:8733461|8733680 hsa-miR-1255b 0 0 1
chr2:8733461|8733680 hsa-miR-1254 0 0 1
chr2:8733461|8733680 hsa-miR-329 0 0 1
chr2:8733461|8733680 hsa-miR-220a 0 0 1
chr2:8733461|8733680 hsa-miR-2278 0 1 0
chr2:8733461|8733680 hsa-miR-3139 0 1 0
chr2:8733461|8733680 hsa-miR-5693 0 1 0
chr2:8733461|8733680 hsa-miR-671-5p 1 0 0
chr2:8733461|8733680 hsa-miR-6720-5p 1 0 0
chr2:8733461|8733680 hsa-miR-3677-5p 1 1 0
chr2:8733461|8733680 hsa-miR-4655-3p 0 1 0
chr2:8733461|8733680 hsa-miR-6882-3p 0 1 0
chr2:8733461|8733680 hsa-miR-1226-5p 1 0 0
chr2:8733461|8733680 hsa-miR-6786-3p 0 1 0
chr2:8733461|8733680 hsa-miR-4763-3p 1 0 0
chr2:8733461|8733680 hsa-miR-10392-5p 0 1 0
chr2:8733461|8733680 hsa-miR-6799-3p 0 1 0
chr2:8733461|8733680 hsa-miR-6529-5p 1 0 0
chr2:8733461|8733680 hsa-miR-6838-5p 1 1 0
chr2:8733461|8733680 hsa-miR-375-5p 0 1 0
chr2:8733461|8733680 hsa-miR-433-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:8733461|8733680
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MAGELGVRQLVVGSAASRLTVRGWATAALTEETWVFRDHVAFCVSHF
Nucleotide Sequence CTGGCTGGAGAGCTCGGTGTGAGGCAGCTCGTTGTGGGAAGCGCGGCGAGCAGGCTCACCGTGCGGGGCTGGGCCACTGCTGCTCTCACTGAGGAAACGTGGGTCTTCAGGGACCACGTGGCTTTCTGCGTTTCTCATTTCTAG
CircID chr2:8733461|8733680
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MWEARRAGSPCGAGPLLLSLRKRGSSGTTWLSAFLISS
Nucleotide Sequence TTGTGGGAAGCGCGGCGAGCAGGCTCACCGTGCGGGGCTGGGCCACTGCTGCTCTCACTGAGGAAACGTGGGTCTTCAGGGACCACGTGGCTTTCTGCGTTTCTCATTTCTAGT
CircID chr2:8733461|8733680
ORF Type ORF3
Protein Length 70
Nucleotide Length 210
Protein Sequence MRNAESHVVPEDPRFLSESSSGPAPHGEPARRASHNELPHTELSSQTPYTLNFSFEELNTLGLDEGAPRH
Nucleotide Sequence ATGAGAAACGCAGAAAGCCACGTGGTCCCTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGAACACGCTTGGCCTGGATGAAGGTGCCCCTCGTCAC
CircID chr2:8733461|8733680
ORF Type ORF4
Protein Length 48
Nucleotide Length 147
Protein Sequence MKTHVSSVRAAVAQPRTVSLLAALPTTSCLTPSSPARRPTHSTSASKS
Nucleotide Sequence CTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab