CircRNA Information

General Information
circRNA Basic Information
CircID chr2:8872132|8872439
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TAGGCCTGGTGGCATGTGCCTGTAGTCCCAGCTACTTGAGAGGCTGGGGTGAGAGGACCGCTTGAGCCTAGGAGTTTGTGGCTGCAATGAGCTATGATTGCACCCCTGCACTGCAGCCTGAGCGACAGAGTGAGGTTTTAATATGAGTTGAGCAATAACCCCTAGGTAGTCTCAAAAACAAAAACAAAAAGATGGAATGTGATTTCAGCAAGTGGAAAATGGCTAGTTTTGCACTCATGAGCAAAGAGACATGGAGGTACCTCGCTTTGCGTGGCAGATGTTAGCAGGGGCATGTGGGAAGGAGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:8872132|8872439 hsa-miR-19a-5p 0 0 1
chr2:8872132|8872439 hsa-miR-19a-3p 0 0 1
chr2:8872132|8872439 hsa-miR-23a-5p 0 0 1
chr2:8872132|8872439 hsa-miR-23a-3p 0 0 1
chr2:8872132|8872439 hsa-miR-26b-5p 0 0 1
chr2:8872132|8872439 hsa-miR-26b-3p 0 0 1
chr2:8872132|8872439 hsa-miR-148a-5p 0 0 1
chr2:8872132|8872439 hsa-miR-148a-3p 0 0 1
chr2:8872132|8872439 hsa-miR-23b-5p 0 0 1
chr2:8872132|8872439 hsa-miR-23b-3p 0 0 1
chr2:8872132|8872439 hsa-miR-130a-5p 0 0 1
chr2:8872132|8872439 hsa-miR-130a-3p 0 0 1
chr2:8872132|8872439 hsa-miR-137-5p 0 0 1
chr2:8872132|8872439 hsa-miR-137-3p 0 0 1
chr2:8872132|8872439 hsa-miR-152-5p 0 0 1
chr2:8872132|8872439 hsa-miR-152-3p 0 0 1
chr2:8872132|8872439 hsa-miR-301a-5p 0 0 1
chr2:8872132|8872439 hsa-miR-301a-3p 0 0 1
chr2:8872132|8872439 hsa-miR-130b-5p 0 0 1
chr2:8872132|8872439 hsa-miR-130b-3p 0 0 1
chr2:8872132|8872439 hsa-miR-148b-5p 0 0 1
chr2:8872132|8872439 hsa-miR-148b-3p 0 0 1
chr2:8872132|8872439 hsa-miR-484 0 0 1
chr2:8872132|8872439 hsa-miR-562 0 0 1
chr2:8872132|8872439 hsa-miR-593-5p 0 0 1
chr2:8872132|8872439 hsa-miR-593-3p 0 0 1
chr2:8872132|8872439 hsa-miR-645 0 0 1
chr2:8872132|8872439 hsa-miR-1323 0 0 1
chr2:8872132|8872439 hsa-miR-1301-5p 0 0 1
chr2:8872132|8872439 hsa-miR-1301-3p 0 0 1
chr2:8872132|8872439 hsa-miR-454-5p 0 0 1
chr2:8872132|8872439 hsa-miR-454-3p 0 0 1
chr2:8872132|8872439 hsa-miR-301b-5p 0 0 1
chr2:8872132|8872439 hsa-miR-301b-3p 0 0 1
chr2:8872132|8872439 hsa-miR-1178-5p 0 0 1
chr2:8872132|8872439 hsa-miR-1178-3p 0 0 1
chr2:8872132|8872439 hsa-miR-1229-5p 0 0 1
chr2:8872132|8872439 hsa-miR-1229-3p 0 0 1
chr2:8872132|8872439 hsa-miR-1297 0 0 1
chr2:8872132|8872439 hsa-miR-548o-3p 0 0 1
chr2:8872132|8872439 hsa-miR-1279 0 0 1
chr2:8872132|8872439 hsa-miR-513c-5p 0 0 1
chr2:8872132|8872439 hsa-miR-513c-3p 0 0 1
chr2:8872132|8872439 hsa-miR-548o 0 0 1
chr2:8872132|8872439 hsa-miR-188-3p 1 1 1
chr2:8872132|8872439 hsa-miR-628-5p 0 0 1
chr2:8872132|8872439 hsa-miR-342-5p 0 1 1
chr2:8872132|8872439 hsa-miR-1260 0 0 1
chr2:8872132|8872439 hsa-miR-26a 0 0 1
chr2:8872132|8872439 hsa-miR-19b 0 0 1
chr2:8872132|8872439 hsa-miR-637 1 0 0
chr2:8872132|8872439 hsa-miR-1303 1 0 0
chr2:8872132|8872439 hsa-miR-1248 0 1 0
chr2:8872132|8872439 hsa-miR-1470 1 0 0
chr2:8872132|8872439 hsa-miR-3183 1 0 0
chr2:8872132|8872439 hsa-miR-4269 0 1 0
chr2:8872132|8872439 hsa-miR-4465 0 1 0
chr2:8872132|8872439 hsa-miR-5787 1 0 0
chr2:8872132|8872439 hsa-miR-12121 0 1 0
chr2:8872132|8872439 hsa-miR-12125 0 1 0
chr2:8872132|8872439 hsa-miR-17-3p 0 1 0
chr2:8872132|8872439 hsa-miR-139-5p 1 0 0
chr2:8872132|8872439 hsa-miR-1225-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6721-5p 1 0 0
chr2:8872132|8872439 hsa-miR-7110-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6845-3p 1 1 0
chr2:8872132|8872439 hsa-miR-6829-5p 0 1 0
chr2:8872132|8872439 hsa-miR-3934-3p 1 1 0
chr2:8872132|8872439 hsa-miR-1343-3p 1 0 0
chr2:8872132|8872439 hsa-miR-939-3p 1 0 0
chr2:8872132|8872439 hsa-miR-4691-3p 0 1 0
chr2:8872132|8872439 hsa-miR-7111-3p 0 1 0
chr2:8872132|8872439 hsa-miR-4787-5p 1 0 0
chr2:8872132|8872439 hsa-miR-4667-3p 1 1 0
chr2:8872132|8872439 hsa-miR-4733-3p 0 1 0
chr2:8872132|8872439 hsa-miR-7156-3p 0 1 0
chr2:8872132|8872439 hsa-miR-6500-3p 0 1 0
chr2:8872132|8872439 hsa-miR-5571-3p 0 1 0
chr2:8872132|8872439 hsa-miR-381-5p 0 1 0
chr2:8872132|8872439 hsa-miR-6837-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6886-3p 1 0 0
chr2:8872132|8872439 hsa-miR-5088-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6794-3p 0 1 0
chr2:8872132|8872439 hsa-miR-1285-5p 1 1 0
chr2:8872132|8872439 hsa-miR-6802-3p 0 1 0
chr2:8872132|8872439 hsa-miR-5589-3p 0 1 0
chr2:8872132|8872439 hsa-miR-449b-3p 0 1 0
chr2:8872132|8872439 hsa-miR-6734-3p 0 1 0
chr2:8872132|8872439 hsa-miR-7158-5p 1 0 0
chr2:8872132|8872439 hsa-miR-6761-3p 1 0 0
chr2:8872132|8872439 hsa-miR-3664-5p 0 1 0
chr2:8872132|8872439 hsa-miR-4763-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6787-5p 1 0 0
chr2:8872132|8872439 hsa-miR-6722-3p 1 0 0
chr2:8872132|8872439 hsa-miR-4685-3p 1 0 0
chr2:8872132|8872439 hsa-miR-1909-3p 1 0 0
chr2:8872132|8872439 hsa-miR-1266-5p 1 0 0
chr2:8872132|8872439 hsa-miR-1271-3p 1 0 0
chr2:8872132|8872439 hsa-miR-6784-3p 0 1 0
chr2:8872132|8872439 hsa-miR-6862-3p 0 1 0
chr2:8872132|8872439 hsa-miR-6810-3p 0 1 0
chr2:8872132|8872439 hsa-miR-619-5p 1 1 0
chr2:8872132|8872439 hsa-miR-6781-3p 1 0 0
chr2:8872132|8872439 hsa-miR-92b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr2:8872132|8872439
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MECDFSKWKMASFALMSKETWRYLALRGRC
Nucleotide Sequence ATGGAATGTGATTTCAGCAAGTGGAAAATGGCTAGTTTTGCACTCATGAGCAAAGAGACATGGAGGTACCTCGCTTTGCGTGGCAGATGTTAG
CircID chr2:8872132|8872439
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MPLLTSATQSEVPPCLFAHECKTSHFPLAEITFHLFVFVFETT
Nucleotide Sequence ATGCCCCTGCTAACATCTGCCACGCAAAGCGAGGTACCTCCATGTCTCTTTGCTCATGAGTGCAAAACTAGCCATTTTCCACTTGCTGAAATCACATTCCATCTTTTTGTTTTTGTTTTTGAGACTACCTAG
CircID chr2:8872132|8872439
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MSLRLQCRGAIIAHCSHKLLGSSGPLTPASQVAGTTGTCHQA
Nucleotide Sequence CTGTCGCTCAGGCTGCAGTGCAGGGGTGCAATCATAGCTCATTGCAGCCACAAACTCCTAGGCTCAAGCGGTCCTCTCACCCCAGCCTCTCAAGTAGCTGGGACTACAGGCACATGCCACCAGGCC
CircID chr2:8872132|8872439
ORF Type ORF4
Protein Length 61
Nucleotide Length 186
Protein Sequence MPRKARYLHVSLLMSAKLAIFHLLKSHSIFLFLFLRLPRGYCSTHIKTSLCRSGCSAGVQS
Nucleotide Sequence CTGCCACGCAAAGCGAGGTACCTCCATGTCTCTTTGCTCATGAGTGCAAAACTAGCCATTTTCCACTTGCTGAAATCACATTCCATCTTTTTGTTTTTGTTTTTGAGACTACCTAGGGGTTATTGCTCAACTCATATTAAAACCTCACTCTGTCGCTCAGGCTGCAGTGCAGGGGTGCAATCATAG
CircID chr2:8872132|8872439
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MQPQTPRLKRSSHPSLSSSWDYRHMPPGL
Nucleotide Sequence TTGCAGCCACAAACTCCTAGGCTCAAGCGGTCCTCTCACCCCAGCCTCTCAAGTAGCTGGGACTACAGGCACATGCCACCAGGCCTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab