CircRNA Information

General Information
circRNA Basic Information
CircID chr2:88857309|88857472
Strand +
CircType exon
Host Gene ENSG00000211592.5;
Algorism CIRI2;
Sequence CCTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTGTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCCTCCCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr2:88857309|88857472 hsa-miR-141-5p 0 0 1
chr2:88857309|88857472 hsa-miR-141-3p 0 0 1
chr2:88857309|88857472 hsa-miR-200a-5p 0 0 1
chr2:88857309|88857472 hsa-miR-200a-3p 0 0 1
chr2:88857309|88857472 hsa-miR-484 0 0 1
chr2:88857309|88857472 hsa-miR-599 0 0 1
chr2:88857309|88857472 hsa-miR-617 0 0 1
chr2:88857309|88857472 hsa-miR-653-5p 0 0 1
chr2:88857309|88857472 hsa-miR-653-3p 0 0 1
chr2:88857309|88857472 hsa-miR-758-5p 0 0 1
chr2:88857309|88857472 hsa-miR-758-3p 0 0 1
chr2:88857309|88857472 hsa-miR-1178-5p 0 0 1
chr2:88857309|88857472 hsa-miR-1178-3p 0 0 1
chr2:88857309|88857472 hsa-miR-1291 1 1 1
chr2:88857309|88857472 hsa-miR-1262 0 1 1
chr2:88857309|88857472 hsa-miR-1267 0 1 1
chr2:88857309|88857472 hsa-miR-127-5p 1 0 1
chr2:88857309|88857472 hsa-miR-331-3p 0 0 1
chr2:88857309|88857472 hsa-miR-642 0 0 1
chr2:88857309|88857472 hsa-miR-1274b 0 0 1
chr2:88857309|88857472 hsa-miR-3652 0 1 0
chr2:88857309|88857472 hsa-miR-3665 0 1 0
chr2:88857309|88857472 hsa-miR-3917 1 0 0
chr2:88857309|88857472 hsa-miR-4430 0 1 0
chr2:88857309|88857472 hsa-miR-4447 0 1 0
chr2:88857309|88857472 hsa-miR-3135b 1 0 0
chr2:88857309|88857472 hsa-miR-4469 0 1 0
chr2:88857309|88857472 hsa-miR-4478 1 0 0
chr2:88857309|88857472 hsa-miR-4689 1 1 0
chr2:88857309|88857472 hsa-miR-4767 1 0 0
chr2:88857309|88857472 hsa-miR-5787 1 0 0
chr2:88857309|88857472 hsa-miR-6081 0 1 0
chr2:88857309|88857472 hsa-miR-6085 1 0 0
chr2:88857309|88857472 hsa-miR-6133 1 0 0
chr2:88857309|88857472 hsa-miR-8089 1 0 0
chr2:88857309|88857472 hsa-miR-92a-2-5p 0 1 0
chr2:88857309|88857472 hsa-miR-6765-5p 1 0 0
chr2:88857309|88857472 hsa-miR-125b-1-3p 1 0 0
chr2:88857309|88857472 hsa-miR-6854-5p 0 1 0
chr2:88857309|88857472 hsa-miR-6799-5p 1 0 0
chr2:88857309|88857472 hsa-miR-7114-5p 1 0 0
chr2:88857309|88857472 hsa-miR-27b-5p 0 1 0
chr2:88857309|88857472 hsa-miR-6873-3p 0 1 0
chr2:88857309|88857472 hsa-miR-6871-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6748-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6732-5p 1 1 0
chr2:88857309|88857472 hsa-miR-4640-5p 1 0 0
chr2:88857309|88857472 hsa-miR-1228-5p 1 0 0
chr2:88857309|88857472 hsa-miR-4690-5p 1 0 0
chr2:88857309|88857472 hsa-miR-149-3p 1 1 0
chr2:88857309|88857472 hsa-miR-193a-5p 1 0 0
chr2:88857309|88857472 hsa-miR-1251-3p 0 1 0
chr2:88857309|88857472 hsa-miR-6867-3p 0 1 0
chr2:88857309|88857472 hsa-miR-4649-3p 1 0 0
chr2:88857309|88857472 hsa-miR-3124-5p 1 0 0
chr2:88857309|88857472 hsa-miR-4639-3p 0 1 0
chr2:88857309|88857472 hsa-miR-1233-5p 1 0 0
chr2:88857309|88857472 hsa-miR-1273h-5p 0 1 0
chr2:88857309|88857472 hsa-miR-4763-3p 1 0 0
chr2:88857309|88857472 hsa-miR-6778-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6787-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6816-5p 1 0 0
chr2:88857309|88857472 hsa-miR-5001-5p 0 1 0
chr2:88857309|88857472 hsa-miR-6726-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6743-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6752-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6756-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6803-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6763-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6779-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6780a-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6797-5p 1 0 0
chr2:88857309|88857472 hsa-miR-7111-5p 1 0 0
chr2:88857309|88857472 hsa-miR-4728-5p 1 1 0
chr2:88857309|88857472 hsa-miR-5196-5p 1 0 0
chr2:88857309|88857472 hsa-miR-328-5p 1 1 0
chr2:88857309|88857472 hsa-miR-4649-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6729-5p 1 0 0
chr2:88857309|88857472 hsa-miR-6858-5p 1 1 0
chr2:88857309|88857472 hsa-miR-6883-5p 0 1 0
chr2:88857309|88857472 hsa-miR-6887-5p 1 0 0
chr2:88857309|88857472 hsa-miR-939-5p 1 1 0
chr2:88857309|88857472 hsa-miR-10394-3p 1 0 0
chr2:88857309|88857472 hsa-miR-6785-5p 0 1 0
chr2:88857309|88857472 hsa-miR-4667-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr2:88857309|88857472
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MRSHPSGPELARHKELQQGRVLEGEVPPPAPQFQPDPLP
Nucleotide Sequence CTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTGTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCCTCCCA
CircID chr2:88857309|88857472
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence LTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Nucleotide Sequence CTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGAGTGTTAG
CircID chr2:88857309|88857472
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MGGGQAGTEEQVGALLPLTLSPVEALCDGRAQALMGDFAGVDFVFLVVCFAQRQ
Nucleotide Sequence ATGGGAGGGGGTCAGGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGCAGGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab